Difference between revisions of "ARGININE-DEIMINASE-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene CHC_T00008732001 == * left end position: ** 452244 * transcription direction: ** POSITIVE * right end position: ** 453218 * centisome position: ** 99...")
 
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene CHC_T00008732001 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGININE-DEIMINASE-RXN ARGININE-DEIMINASE-RXN] ==
−
* left end position:
+
* direction:
−
** 452244
+
** REVERSIBLE
−
* transcription direction:
+
* ec number:
−
** POSITIVE
+
** [http://enzyme.expasy.org/EC/3.5.3.6 EC-3.5.3.6]
−
* right end position:
+
−
** 453218
+
−
* centisome position:
+
−
** 99.25750   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[PYRUVDEH-RXN]]
+
* With identifiers:
−
** original_genome
+
** 1 [[WATER]][c] '''+''' 1 [[ARG]][c] '''<=>''' 1 [[L-CITRULLINE]][c] '''+''' 1 [[AMMONIUM]][c]
−
***automated-name-match
+
* With common name(s):
−
* [[RXN-12508]]
+
** 1 H2O[c] '''+''' 1 L-arginine[c] '''<=>''' 1 L-citrulline[c] '''+''' 1 ammonium[c]
−
** original_genome
+
 
−
***automated-name-match
+
== Genes associated with this reaction  ==
−
* [[RXN-12583]]
+
Genes have been associated with this reaction based on different elements listed below.
−
** original_genome
+
* Gene: [[CHC_T00008387001_1]]
−
***automated-name-match
+
** Source: [[orthology-galdieria.sulphuraria]]
−
* [[RXN0-1132]]
+
== Pathways ==
−
** original_genome
+
* [[PWY-4981]], L-proline biosynthesis II (from arginine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4981 PWY-4981]
−
***automated-name-match
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[RXN0-1133]]
+
* [[ARGDEGRAD-PWY]], L-arginine degradation V (arginine deiminase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGDEGRAD-PWY ARGDEGRAD-PWY]
−
** original_genome
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
***automated-name-match
+
== Reconstruction information  ==
−
* [[RXN0-1134]]
+
* Category: [[orthology]]
−
** original_genome
+
** Source: [[orthology-galdieria.sulphuraria]]
−
***automated-name-match
+
*** Tool: [[pantograph]]
−
== Pathways associated ==
+
−
* [[PYRUVDEHYD-PWY]]
+
−
* [[PWY-7218]]
+
−
* [[PWY-7384]]
+
−
* [[PWY-6886]]
+
−
* [[PWY-5537]]
+
−
* [[GLYCOLYSIS-TCA-GLYOX-BYPASS]]
+
−
* [[PWY-5482]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=452244}}
+
* RHEA:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19597 19597]
−
{{#set: right end position=453218}}
+
* UNIPROT:
−
{{#set: centisome position=99.25750    }}
+
** [http://www.uniprot.org/uniprot/P23793 P23793]
−
{{#set: reaction associated=PYRUVDEH-RXN|RXN-12508|RXN-12583|RXN0-1132|RXN0-1133|RXN0-1134}}
+
** [http://www.uniprot.org/uniprot/P58013 P58013]
−
{{#set: pathway associated=PYRUVDEHYD-PWY|PWY-7218|PWY-7384|PWY-6886|PWY-5537|GLYCOLYSIS-TCA-GLYOX-BYPASS|PWY-5482}}
+
** [http://www.uniprot.org/uniprot/P13981 P13981]
 +
** [http://www.uniprot.org/uniprot/P75218 P75218]
 +
** [http://www.uniprot.org/uniprot/Q48294 Q48294]
 +
** [http://www.uniprot.org/uniprot/Q27657 Q27657]
 +
** [http://www.uniprot.org/uniprot/O53088 O53088]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00552 R00552]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: ec number=EC-3.5.3.6}}
 +
{{#set: gene associated=CHC_T00008387001_1}}
 +
{{#set: in pathway=PWY-4981|ARGDEGRAD-PWY}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-galdieria.sulphuraria}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:49, 9 January 2019

Reaction ARGININE-DEIMINASE-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 L-arginine[c] <=> 1 L-citrulline[c] + 1 ammonium[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-4981, L-proline biosynthesis II (from arginine): PWY-4981
    • 5 reactions found over 6 reactions in the full pathway
  • ARGDEGRAD-PWY, L-arginine degradation V (arginine deiminase pathway): ARGDEGRAD-PWY
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=ARGININE-DEIMINASE-RXN&oldid=20866"