Difference between revisions of "RXN-5466"

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(Created page with "Category:Gene == Gene CHC_T00008882001 == * left end position: ** 106452 * transcription direction: ** POSITIVE * right end position: ** 107204 * centisome position: ** 99...")
 
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene CHC_T00008882001 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5466 RXN-5466] ==
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* left end position:
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* direction:
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** 106452
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** LEFT-TO-RIGHT
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* transcription direction:
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* ec number:
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** POSITIVE
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** [http://enzyme.expasy.org/EC/2.4.1.258 EC-2.4.1.258]
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* right end position:
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** 107204
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* centisome position:
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** 99.288345   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[ENOYL-COA-DELTA-ISOM-RXN]]
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* With identifiers:
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** original_genome
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** 1 [[CPD-5164]][c] '''+''' 1 [[CPD-171]][c] '''=>''' 1 [[CPD-5165]][c] '''+''' 1 [[DOLICHOLP]][c] '''+''' 1 [[PROTON]][c]
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***automated-name-match
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* With common name(s):
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== Pathways associated ==
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** 1 α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c] '''+''' 1 a dolichyl β-D-mannosyl phosphate[c] '''=>''' 1 α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→3)-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c] '''+''' 1 a dolichyl phosphate[c] '''+''' 1 H+[c]
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* [[PWY-5137]]
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* [[FAO-PWY]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[CHC_T00009519001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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== Pathways ==
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* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]], protein N-glycosylation (eukaryotic, high mannose): [http://metacyc.org/META/NEW-IMAGE?object=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]
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** '''15''' reactions found over '''19''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=106452}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29530 29530]
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{{#set: right end position=107204}}
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* LIGAND-RXN:
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{{#set: centisome position=99.288345    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R06258 R06258]
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{{#set: reaction associated=ENOYL-COA-DELTA-ISOM-RXN}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: pathway associated=PWY-5137|FAO-PWY}}
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{{#set: ec number=EC-2.4.1.258}}
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{{#set: gene associated=CHC_T00009519001_1}}
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{{#set: in pathway=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|orthology-ectocarpus_siliculosus}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:55, 9 January 2019

Reaction RXN-5466

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c] + 1 a dolichyl β-D-mannosyl phosphate[c] => 1 α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→3)-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c] + 1 a dolichyl phosphate[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-5466&oldid=20995"