Difference between revisions of "FERMENTATION-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-550 RXN66-550] == * direction: ** LEFT-TO-RIGHT * common name: ** electron transfer flavoprot...")
 
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-550 RXN66-550] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY] ==
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* direction:
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** LEFT-TO-RIGHT
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* common name:
 
* common name:
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** electron transfer flavoprotein-ubiquinone oxidoreductase
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** mixed acid fermentation
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* ec number:
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* taxonomic range:
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** [http://enzyme.expasy.org/EC/1.5.5.1 EC-1.5.5.1]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* Synonym(s):
 
* Synonym(s):
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** fermentation
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''11''' reactions found over '''16''' reactions in the full pathway
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** 1 [[Ubiquinones]][c] '''+''' 1 [[ETF-Reduced]][c] '''=>''' 1 [[Ubiquinols]][c] '''+''' 1 [[ETF-Oxidized]][c] '''+''' 1 [[PROTON]][c]
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* [[ACETALD-DEHYDROG-RXN]]
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* With common name(s):
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** 0 associated gene:
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** 1 a ubiquinone[c] '''+''' 1 a reduced electron-transfer flavoprotein[c] '''=>''' 1 an ubiquinol[c] '''+''' 1 an oxidized electron-transfer flavoprotein[c] '''+''' 1 H+[c]
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** 1 reconstruction source(s) associated:
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*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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== Genes associated with this reaction  ==
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* [[ACONITATEDEHYDR-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** 3 associated gene(s):
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* [[CHC_T00008888001_1]]
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*** [[CHC_T00009087001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[CHC_T00008781001_1]]
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* [[CHC_T00008888001]]
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*** [[CHC_T00008781001]]
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** ORIGINAL_GENOME
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** 3 reconstruction source(s) associated:
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***AUTOMATED-NAME-MATCH
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*** [[orthology-galdieria.sulphuraria]]
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== Pathways  ==
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*** [[annotation-original_genome]]
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== Reconstruction information  ==
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*** [[orthology-ectocarpus_siliculosus]]
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* [[orthology]]:
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* [[ACONITATEHYDR-RXN]]
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** [[pantograph]]:
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** 3 associated gene(s):
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*** [[galdieria.sulphuraria]]
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*** [[CHC_T00009087001_1]]
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* [[annotation]]:
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*** [[CHC_T00008781001]]
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** [[pathwaytools]]:
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*** [[CHC_T00008781001_1]]
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*** [[original_genome]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[ALCOHOL-DEHYDROG-RXN]]
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** 1 associated gene(s):
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*** [[CHC_T00010066001_1]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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* [[CITSYN-RXN]]
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** 1 associated gene(s):
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*** [[CHC_T00007817001_1]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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* [[DLACTDEHYDROGNAD-RXN]]
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** 1 associated gene(s):
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*** [[CHC_T00003974001_1]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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* [[FUMHYDR-RXN]]
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** 2 associated gene(s):
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*** [[CHC_T00008951001_1]]
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*** [[CHC_T00008951001]]
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** 4 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[ISOCITDEH-RXN]]
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** 1 associated gene(s):
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*** [[CHC_T00009580001_1]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[MALATE-DEH-RXN]]
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** 6 associated gene(s):
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*** [[CHC_T00009292001_1]]
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*** [[CHC_T00008733001_1]]
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*** [[CHC_T00008600001_1]]
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*** [[CHC_T00008733001]]
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*** [[CHC_T00009350001_1]]
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*** [[CHC_T00009173001_1]]
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** 4 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[PEPCARBOX-RXN]]
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** 1 associated gene(s):
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*** [[CHC_T00008437001_1]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[PEPDEPHOS-RXN]]
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** 6 associated gene(s):
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*** [[CHC_T00008530001]]
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*** [[CHC_T00008652001]]
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*** [[CHC_T00008652001_1]]
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*** [[CHC_T00008482001_1]]
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*** [[CHC_T00008482001]]
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*** [[CHC_T00008530001_1]]
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** 4 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=ACETATEKIN-RXN ACETATEKIN-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=FHLMULTI-RXN FHLMULTI-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PHOSACETYLTRANS-RXN PHOSACETYLTRANS-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PYRUVFORMLY-RXN PYRUVFORMLY-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R601-RXN R601-RXN]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* ECOCYC:
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{{#set: common name=electron transfer flavoprotein-ubiquinone oxidoreductase}}
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
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{{#set: ec number=EC-1.5.5.1}}
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{{#set: common name=mixed acid fermentation}}
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{{#set: gene associated=CHC_T00008888001_1|CHC_T00008888001}}
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{{#set: taxonomic range=TAX-4751}}
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{{#set: in pathway=}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: reconstruction category=orthology}}
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{{#set: common name=fermentation}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reaction found=11}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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{{#set: total reaction=16}}
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{{#set: reconstruction category=annotation}}
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{{#set: completion rate=69.0}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=original_genome}}
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Latest revision as of 15:54, 9 January 2019

Pathway FERMENTATION-PWY

  • common name:
    • mixed acid fermentation
  • taxonomic range:
  • Synonym(s):
    • fermentation

Reaction(s) found

11 reactions found over 16 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=FERMENTATION-PWY&oldid=20966"