Difference between revisions of "PWY-7184"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-302 RXN0-302] == * direction: ** LEFT-TO-RIGHT * common name: ** 2C-methyl-D-erythritol 2,4-cy...")
 
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-302 RXN0-302] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184] ==
−
* direction:
+
−
** LEFT-TO-RIGHT
+
 
* common name:
 
* common name:
−
** 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
+
** pyrimidine deoxyribonucleotides de novo biosynthesis I
−
* ec number:
+
* taxonomic range:
−
** [http://enzyme.expasy.org/EC/4.6.1.12 EC-4.6.1.12]
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''9''' reactions found over '''9''' reactions in the full pathway
−
** 1 [[2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET]][c] '''=>''' 1 [[CMP]][c] '''+''' 1 [[2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE]][c]
+
* [[CDPREDUCT-RXN]]
−
* With common name(s):
+
** 4 associated gene(s):
−
** 1 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] '''=>''' 1 CMP[c] '''+''' 1 2-C-methyl-D-erythritol-2,4-cyclodiphosphate[c]
+
*** [[CHC_T00008864001_1]]
−
 
+
*** [[CHC_T00008864001]]
−
== Genes associated with this reaction  ==
+
*** [[CHC_T00008926001]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[CHC_T00008926001_1]]
−
* [[CHC_T00009483001_1]]
+
** 4 reconstruction source(s) associated:
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
*** [[orthology-galdieria.sulphuraria]]
−
* [[CHC_T00009483001]]
+
*** [[annotation-original_genome]]
−
** ORIGINAL_GENOME
+
*** [[orthology-arabidopsis_thaliana]]
−
***AUTOMATED-NAME-MATCH
+
*** [[orthology-ectocarpus_siliculosus]]
−
== Pathways  ==
+
* [[DCDPKIN-RXN]]
−
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
+
** 4 associated gene(s):
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
*** [[CHC_T00009258001_1]]
−
* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
+
*** [[CHC_T00009233001]]
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
*** [[CHC_T00009258001]]
−
== Reconstruction information  ==
+
*** [[CHC_T00009233001_1]]
−
* [[orthology]]:
+
** 4 reconstruction source(s) associated:
−
** [[pantograph]]:
+
*** [[orthology-galdieria.sulphuraria]]
−
*** [[galdieria.sulphuraria]]
+
*** [[annotation-original_genome]]
−
* [[annotation]]:
+
*** [[orthology-arabidopsis_thaliana]]
−
** [[pathwaytools]]:
+
*** [[orthology-ectocarpus_siliculosus]]
−
*** [[original_genome]]
+
* [[DTDPKIN-RXN]]
 +
** 4 associated gene(s):
 +
*** [[CHC_T00009233001_1]]
 +
*** [[CHC_T00009258001_1]]
 +
*** [[CHC_T00009258001]]
 +
*** [[CHC_T00009233001]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
*** [[annotation-original_genome]]
 +
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
* [[DTMPKI-RXN]]
 +
** 1 associated gene(s):
 +
*** [[CHC_T00002059001_1]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
* [[DUDPKIN-RXN]]
 +
** 4 associated gene(s):
 +
*** [[CHC_T00009258001]]
 +
*** [[CHC_T00009233001_1]]
 +
*** [[CHC_T00009258001_1]]
 +
*** [[CHC_T00009233001]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
*** [[annotation-original_genome]]
 +
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
* [[DUTP-PYROP-RXN]]
 +
** 2 associated gene(s):
 +
*** [[CHC_T00009365001_1]]
 +
*** [[CHC_T00002427001_1]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
* [[RXN-12195]]
 +
** 7 associated gene(s):
 +
*** [[CHC_T00001236001_1]]
 +
*** [[CHC_T00010157001_1]]
 +
*** [[CHC_T00004941001_1]]
 +
*** [[CHC_T00000060001_1]]
 +
*** [[CHC_T00007176001_1]]
 +
*** [[CHC_T00005746001_1]]
 +
*** [[CHC_T00006198001_1]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
* [[THYMIDYLATESYN-RXN]]
 +
** 1 associated gene(s):
 +
*** [[CHC_T00010030001_1]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
* [[UDPREDUCT-RXN]]
 +
** 4 associated gene(s):
 +
*** [[CHC_T00008926001]]
 +
*** [[CHC_T00008926001_1]]
 +
*** [[CHC_T00008864001]]
 +
*** [[CHC_T00008864001_1]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
*** [[annotation-original_genome]]
 +
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* ECOCYC:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23864 23864]
+
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-7184 PWY-7184]
−
* LIGAND-RXN:
+
{{#set: common name=pyrimidine deoxyribonucleotides de novo biosynthesis I}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R05637 R05637]
+
{{#set: taxonomic range=TAX-2157}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: taxonomic range=TAX-2759}}
−
{{#set: common name=2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase}}
+
{{#set: taxonomic range=TAX-2}}
−
{{#set: ec number=EC-4.6.1.12}}
+
{{#set: reaction found=9}}
−
{{#set: gene associated=CHC_T00009483001_1|CHC_T00009483001}}
+
{{#set: total reaction=9}}
−
{{#set: in pathway=NONMEVIPP-PWY|PWY-7560}}
+
{{#set: completion rate=100.0}}
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=galdieria.sulphuraria}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=original_genome}}
+

Latest revision as of 15:57, 9 January 2019

Pathway PWY-7184

  • common name:
    • pyrimidine deoxyribonucleotides de novo biosynthesis I
  • taxonomic range:
  • Synonym(s):

Reaction(s) found

9 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PWY-7184&oldid=21042"