Difference between revisions of "RXN-1321"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7128 PWY-7128] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7128 PWY-7128] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1321 RXN-1321] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** nicotine degradation III (VPP pathway)
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** Lipoxygenase
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* ec number:
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** [http://enzyme.expasy.org/EC/1.13.11.12 EC-1.13.11.12]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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* '''1''' reaction(s) found
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* With identifiers:
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** [[RXN-646]]
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** 1 [[LINOLENIC_ACID]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CPD-725]][c]
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== Reaction(s) not found ==
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* With common name(s):
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* '''9''' reaction(s) not found
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** 1 α-linolenate[c] '''+''' 1 oxygen[c] '''=>''' 1 13(S)-HPOTE[c]
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** [http://metacyc.org/META/NEW-IMAGE?object=MALEATE-ISOMERASE-RXN MALEATE-ISOMERASE-RXN]
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** [http://metacyc.org/META/NEW-IMAGE?object=NICOTINE-DEHYDROGENASE-RXN NICOTINE-DEHYDROGENASE-RXN]
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== Genes associated with this reaction  ==
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-11318 RXN-11318]
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Genes have been associated with this reaction based on different elements listed below.
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-13081 RXN-13081]
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* Gene: [[CHC_T00008739001]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-16526 RXN-16526]
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** Source: [[annotation-original_genome]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-16527 RXN-16527]
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*** Assignment: AUTOMATED-NAME-MATCH
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** [http://metacyc.org/META/NEW-IMAGE?object=1.13.11.9-RXN 1.13.11.9-RXN]
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* Gene: [[CHC_T00008739001_1]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-16529 RXN-16529]
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** Source: [[orthology-ectocarpus_siliculosus]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-16530 RXN-16530]
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** Source: [[orthology-arabidopsis_thaliana]]
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== Pathways  ==
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* [[PWY-735]], jasmonic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-735 PWY-735]
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** '''13''' reactions found over '''19''' reactions in the full pathway
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* [[PWY-5410]], traumatin and (Z)-3-hexen-1-yl acetate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5410 PWY-5410]
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** '''3''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-arabidopsis_thaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-original_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2}}
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* RHEA:
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{{#set: common name=nicotine degradation III (VPP pathway)}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34495 34495]
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{{#set: reaction found=1}}
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* LIGAND-RXN:
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{{#set: reaction not found=9}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07869 R07869]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Lipoxygenase}}
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{{#set: ec number=EC-1.13.11.12}}
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{{#set: gene associated=CHC_T00008739001|CHC_T00008739001_1}}
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{{#set: in pathway=PWY-735|PWY-5410}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 16:03, 9 January 2019

Reaction RXN-1321

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Lipoxygenase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-735, jasmonic acid biosynthesis: PWY-735
    • 13 reactions found over 19 reactions in the full pathway
  • PWY-5410, traumatin and (Z)-3-hexen-1-yl acetate biosynthesis: PWY-5410
    • 3 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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