Difference between revisions of "UROGENDECARBOX-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-18777 CPD-18777] == * smiles: ** COC1(=C(NCC([O-])=O)CC(CO)(O)CC(=O)1) * common name: ** my...")
 
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-18777 CPD-18777] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENDECARBOX-RXN UROGENDECARBOX-RXN] ==
−
* smiles:
+
* direction:
−
** COC1(=C(NCC([O-])=O)CC(CO)(O)CC(=O)1)
+
** LEFT-TO-RIGHT
−
* common name:
+
* ec number:
−
** mycosporine glycine
+
** [http://enzyme.expasy.org/EC/4.1.1.37 EC-4.1.1.37]
−
* inchi key:
+
−
** InChIKey=XZQILKYKJYHEHD-JTQLQIEISA-M
+
−
* molecular weight:
+
−
** 244.224   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
== Reaction(s) known to produce the compound ==
+
* With identifiers:
−
* [[RXN-17368]]
+
** 4 [[PROTON]][c] '''+''' 1 [[UROPORPHYRINOGEN-III]][c] '''=>''' 1 [[COPROPORPHYRINOGEN_III]][c] '''+''' 4 [[CARBON-DIOXIDE]][c]
−
== Reaction(s) of unknown directionality ==
+
* With common name(s):
−
* [[RXN-17371]]
+
** 4 H+[c] '''+''' 1 uroporphyrinogen-III[c] '''=>''' 1 coproporphyrinogen III[c] '''+''' 4 CO2[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[CHC_T00008531001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
== Pathways  ==
 +
* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
 +
** '''3''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7766]], heme biosynthesis IV (Gram-positive bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7766 PWY-7766]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[HEMESYN2-PWY]], heme biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
{{#set: smiles=COC1(=C(NCC([O-])=O)CC(CO)(O)CC(=O)1)}}
+
* RHEA:
−
{{#set: common name=mycosporine glycine}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19865 19865]
−
{{#set: inchi key=InChIKey=XZQILKYKJYHEHD-JTQLQIEISA-M}}
+
* UNIPROT:
−
{{#set: molecular weight=244.224    }}
+
** [http://www.uniprot.org/uniprot/P06132 P06132]
−
{{#set: produced by=RXN-17368}}
+
** [http://www.uniprot.org/uniprot/P16891 P16891]
−
{{#set: consumed or produced by=RXN-17371}}
+
** [http://www.uniprot.org/uniprot/P32395 P32395]
 +
** [http://www.uniprot.org/uniprot/Q9PN54 Q9PN54]
 +
** [http://www.uniprot.org/uniprot/Q9JV52 Q9JV52]
 +
** [http://www.uniprot.org/uniprot/P29680 P29680]
 +
** [http://www.uniprot.org/uniprot/P32347 P32347]
 +
** [http://www.uniprot.org/uniprot/P32920 P32920]
 +
** [http://www.uniprot.org/uniprot/P54224 P54224]
 +
** [http://www.uniprot.org/uniprot/O81220 O81220]
 +
** [http://www.uniprot.org/uniprot/P70697 P70697]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03197 R03197]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: ec number=EC-4.1.1.37}}
 +
{{#set: gene associated=CHC_T00008531001_1}}
 +
{{#set: in pathway=PWY0-1415|CHLOROPHYLL-SYN|HEME-BIOSYNTHESIS-II|PWY-5531|PWY-7766|HEMESYN2-PWY|PWY-7159}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-galdieria.sulphuraria|orthology-ectocarpus_siliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:17, 9 January 2019

Reaction UROGENDECARBOX-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1415, superpathway of heme biosynthesis from uroporphyrinogen-III: PWY0-1415
    • 5 reactions found over 6 reactions in the full pathway
  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): CHLOROPHYLL-SYN
    • 9 reactions found over 9 reactions in the full pathway
  • HEME-BIOSYNTHESIS-II, heme biosynthesis I (aerobic): HEME-BIOSYNTHESIS-II
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-5531, 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): PWY-5531
    • 3 reactions found over 9 reactions in the full pathway
  • PWY-7766, heme biosynthesis IV (Gram-positive bacteria): PWY-7766
    • 1 reactions found over 4 reactions in the full pathway
  • HEMESYN2-PWY, heme biosynthesis II (anaerobic): HEMESYN2-PWY
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): PWY-7159
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=UROGENDECARBOX-RXN&oldid=21540"