Difference between revisions of "RXN-11989"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCOGEN-BRANCH-RXN GLYCOGEN-BRANCH-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 1,4-alp...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11989 RXN-11989] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCOGEN-BRANCH-RXN GLYCOGEN-BRANCH-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11989 RXN-11989] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** 1,4-alpha-Glucan branching enzyme
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.4.1.18 EC-2.4.1.18]
+
** [http://enzyme.expasy.org/EC/1.13.11.59 EC-1.13.11.59]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[1-4-alpha-D-Glucan]][c] '''=>''' 1 [[Glycogens]][c]
+
** 1 [[CPD-7953]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CPD-12935]][c] '''+''' 1 [[PRENAL]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a 1,4-α-D-glucan[c] '''=>''' 1 a glycogen[c]
+
** 1 torulene[c] '''+''' 1 oxygen[c] '''=>''' 1 4'-apo-β-carotenal[c] '''+''' 1 3-methyl-2-butenal[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00008662001]]
+
* Gene: [[CHC_T00003476001_1]]
−
** ORIGINAL_GENOME
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
***AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00004955001_1]]
−
* [[CHC_T00008662001_1]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
* Gene: [[CHC_T00004944001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[GLYCOGENSYNTH-PWY]], glycogen biosynthesis I (from ADP-D-Glucose): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOGENSYNTH-PWY GLYCOGENSYNTH-PWY]
+
* [[PWY-6681]], neurosporaxanthin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6681 PWY-6681]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[original_genome]]
+
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
+
* RHEA:
−
** [http://www.uniprot.org/uniprot/Q04446 Q04446]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31522 31522]
−
** [http://www.uniprot.org/uniprot/P30539 P30539]
+
−
** [http://www.uniprot.org/uniprot/P30537 P30537]
+
−
** [http://www.uniprot.org/uniprot/P45177 P45177]
+
−
** [http://www.uniprot.org/uniprot/P16954 P16954]
+
−
** [http://www.uniprot.org/uniprot/Q41740 Q41740]
+
−
** [http://www.uniprot.org/uniprot/Q01401 Q01401]
+
−
** [http://www.uniprot.org/uniprot/P07762 P07762]
+
−
** [http://www.uniprot.org/uniprot/Q7M284 Q7M284]
+
−
** [http://www.uniprot.org/uniprot/P30538 P30538]
+
−
** [http://www.uniprot.org/uniprot/Q08809 Q08809]
+
−
** [http://www.uniprot.org/uniprot/Q59243 Q59243]
+
−
** [http://www.uniprot.org/uniprot/Q40733 Q40733]
+
−
** [http://www.uniprot.org/uniprot/Q59832 Q59832]
+
−
** [http://www.uniprot.org/uniprot/P30924 P30924]
+
−
** [http://www.uniprot.org/uniprot/P39118 P39118]
+
−
** [http://www.uniprot.org/uniprot/P52980 P52980]
+
−
** [http://www.uniprot.org/uniprot/P32775 P32775]
+
−
** [http://www.uniprot.org/uniprot/Q42526 Q42526]
+
−
** [http://www.uniprot.org/uniprot/Q42531 Q42531]
+
−
** [http://www.uniprot.org/uniprot/Q59833 Q59833]
+
−
** [http://www.uniprot.org/uniprot/O81387 O81387]
+
−
** [http://www.uniprot.org/uniprot/O24421 O24421]
+
−
** [http://www.uniprot.org/uniprot/Q08047 Q08047]
+
−
** [http://www.uniprot.org/uniprot/O24393 O24393]
+
−
** [http://www.uniprot.org/uniprot/Q41058 Q41058]
+
−
** [http://www.uniprot.org/uniprot/Q41059 Q41059]
+
−
** [http://www.uniprot.org/uniprot/P93691 P93691]
+
−
** [http://www.uniprot.org/uniprot/O04074 O04074]
+
−
** [http://www.uniprot.org/uniprot/O24397 O24397]
+
−
** [http://www.uniprot.org/uniprot/O49953 O49953]
+
−
** [http://www.uniprot.org/uniprot/O04864 O04864]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=1,4-alpha-Glucan branching enzyme}}
+
{{#set: ec number=EC-1.13.11.59}}
−
{{#set: ec number=EC-2.4.1.18}}
+
{{#set: gene associated=CHC_T00003476001_1|CHC_T00004955001_1|CHC_T00004944001_1}}
−
{{#set: gene associated=CHC_T00008662001|CHC_T00008662001_1}}
+
{{#set: in pathway=PWY-6681}}
−
{{#set: in pathway=GLYCOGENSYNTH-PWY}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=galdieria.sulphuraria}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=original_genome}}
 

Latest revision as of 16:43, 23 May 2018

Reaction RXN-11989

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 torulene[c] + 1 oxygen[c] => 1 4'-apo-β-carotenal[c] + 1 3-methyl-2-butenal[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6681, neurosporaxanthin biosynthesis: PWY-6681
    • 2 reactions found over 7 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-11989&oldid=15091"