Difference between revisions of "DCDPKIN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.25.1-RXN 3.4.25.1-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Proteasome subunit al...")
 
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.25.1-RXN 3.4.25.1-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DCDPKIN-RXN DCDPKIN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Proteasome subunit alpha type
+
** nucleoside-diphosphate kinase
−
** Proteasome subunit beta type
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.4.25.1 EC-3.4.25.1]
+
** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[General-Protein-Substrates]][c] '''=>''' 1 [[Peptides-holder]][c]
+
** 1 [[DCDP]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[DCTP]][c] '''+''' 1 [[ADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 a protein[c] '''=>''' 1 a peptide[c]
+
** 1 dCDP[c] '''+''' 1 ATP[c] '''=>''' 1 dCTP[c] '''+''' 1 ADP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00009544001_1]]
+
* Gene: [[CHC_T00009258001_1]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
* [[CHC_T00008987001_1]]
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** Source: [[orthology-arabidopsis_thaliana]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
* Gene: [[CHC_T00009233001]]
−
* [[CHC_T00009373001_1]]
+
** Source: [[annotation-original_genome]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[CHC_T00005811001_1]]
+
* Gene: [[CHC_T00009258001]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[annotation-original_genome]]
−
* [[CHC_T00005699001_1]]
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*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[galdieria.sulphuraria]]
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* Gene: [[CHC_T00009233001_1]]
−
* [[CHC_T00008941001_1]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
* [[CHC_T00008367001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00008406001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00009346001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00008406001]]
+
−
** ORIGINAL_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[CHC_T00008987001]]
+
−
** ORIGINAL_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[CHC_T00009004001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00009185001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00005235001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
 +
** '''12''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-galdieria.sulphuraria]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-arabidopsis_thaliana]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[original_genome]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
+
* RHEA:
−
** [http://www.uniprot.org/uniprot/Q7DLR9 Q7DLR9]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27678 27678]
−
** [http://www.uniprot.org/uniprot/P28062 P28062]
+
* LIGAND-RXN:
−
** [http://www.uniprot.org/uniprot/Q9TRJ7 Q9TRJ7]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02326 R02326]
−
** [http://www.uniprot.org/uniprot/P30656 P30656]
+
−
** [http://www.uniprot.org/uniprot/P30657 P30657]
+
−
** [http://www.uniprot.org/uniprot/P28074 P28074]
+
−
** [http://www.uniprot.org/uniprot/P40302 P40302]
+
−
** [http://www.uniprot.org/uniprot/O24633 O24633]
+
−
** [http://www.uniprot.org/uniprot/P40303 P40303]
+
−
** [http://www.uniprot.org/uniprot/Q9V122 Q9V122]
+
−
** [http://www.uniprot.org/uniprot/P40306 P40306]
+
−
** [http://www.uniprot.org/uniprot/P28063 P28063]
+
−
** [http://www.uniprot.org/uniprot/P25786 P25786]
+
−
** [http://www.uniprot.org/uniprot/P28076 P28076]
+
−
** [http://www.uniprot.org/uniprot/O13268 O13268]
+
−
** [http://www.uniprot.org/uniprot/P34064 P34064]
+
−
** [http://www.uniprot.org/uniprot/P60901 P60901]
+
−
** [http://www.uniprot.org/uniprot/P18421 P18421]
+
−
** [http://www.uniprot.org/uniprot/P18053 P18053]
+
−
** [http://www.uniprot.org/uniprot/P28072 P28072]
+
−
** [http://www.uniprot.org/uniprot/P22769 P22769]
+
−
** [http://www.uniprot.org/uniprot/P25043 P25043]
+
−
** [http://www.uniprot.org/uniprot/P28065 P28065]
+
−
** [http://www.uniprot.org/uniprot/P30186 P30186]
+
−
** [http://www.uniprot.org/uniprot/P60900 P60900]
+
−
** [http://www.uniprot.org/uniprot/P34065 P34065]
+
−
** [http://www.uniprot.org/uniprot/P34067 P34067]
+
−
** [http://www.uniprot.org/uniprot/P40301 P40301]
+
−
** [http://www.uniprot.org/uniprot/Q8AVD2 Q8AVD2]
+
−
** [http://www.uniprot.org/uniprot/Q7LZF1 Q7LZF1]
+
−
** [http://www.uniprot.org/uniprot/P40307 P40307]
+
−
** [http://www.uniprot.org/uniprot/P23724 P23724]
+
−
** [http://www.uniprot.org/uniprot/P28070 P28070]
+
−
** [http://www.uniprot.org/uniprot/P22141 P22141]
+
−
** [http://www.uniprot.org/uniprot/P49721 P49721]
+
−
** [http://www.uniprot.org/uniprot/P49720 P49720]
+
−
** [http://www.uniprot.org/uniprot/P25156 P25156]
+
−
** [http://www.uniprot.org/uniprot/Q09682 Q09682]
+
−
** [http://www.uniprot.org/uniprot/Q09720 Q09720]
+
−
** [http://www.uniprot.org/uniprot/P48004 P48004]
+
−
** [http://www.uniprot.org/uniprot/P38624 P38624]
+
−
** [http://www.uniprot.org/uniprot/P32379 P32379]
+
−
** [http://www.uniprot.org/uniprot/Q7LZF0 Q7LZF0]
+
−
** [http://www.uniprot.org/uniprot/P62333 P62333]
+
−
** [http://www.uniprot.org/uniprot/Q24178 Q24178]
+
−
** [http://www.uniprot.org/uniprot/Q27575 Q27575]
+
−
** [http://www.uniprot.org/uniprot/P21242 P21242]
+
−
** [http://www.uniprot.org/uniprot/P21243 P21243]
+
−
** [http://www.uniprot.org/uniprot/P23638 P23638]
+
−
** [http://www.uniprot.org/uniprot/P23639 P23639]
+
−
** [http://www.uniprot.org/uniprot/P12881 P12881]
+
−
** [http://www.uniprot.org/uniprot/P25787 P25787]
+
−
** [http://www.uniprot.org/uniprot/P20618 P20618]
+
−
** [http://www.uniprot.org/uniprot/P25788 P25788]
+
−
** [http://www.uniprot.org/uniprot/P25789 P25789]
+
−
** [http://www.uniprot.org/uniprot/P18420 P18420]
+
−
** [http://www.uniprot.org/uniprot/P18422 P18422]
+
−
** [http://www.uniprot.org/uniprot/P21670 P21670]
+
−
** [http://www.uniprot.org/uniprot/P52428 P52428]
+
−
** [http://www.uniprot.org/uniprot/P93395 P93395]
+
−
** [http://www.uniprot.org/uniprot/O04861 O04861]
+
−
** [http://www.uniprot.org/uniprot/Q8LD27 Q8LD27]
+
−
** [http://www.uniprot.org/uniprot/O48551 O48551]
+
−
** [http://www.uniprot.org/uniprot/O24030 O24030]
+
−
** [http://www.uniprot.org/uniprot/P42742 P42742]
+
−
** [http://www.uniprot.org/uniprot/O81147 O81147]
+
−
** [http://www.uniprot.org/uniprot/O23708 O23708]
+
−
** [http://www.uniprot.org/uniprot/O24616 O24616]
+
−
** [http://www.uniprot.org/uniprot/O81149 O81149]
+
−
** [http://www.uniprot.org/uniprot/Q42134 Q42134]
+
−
** [http://www.uniprot.org/uniprot/P34066 P34066]
+
−
** [http://www.uniprot.org/uniprot/O23712 O23712]
+
−
** [http://www.uniprot.org/uniprot/O23710 O23710]
+
−
** [http://www.uniprot.org/uniprot/Q7DLS1 Q7DLS1]
+
−
** [http://www.uniprot.org/uniprot/O81153 O81153]
+
−
** [http://www.uniprot.org/uniprot/O23714 O23714]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Proteasome subunit alpha type}}
+
{{#set: common name=nucleoside-diphosphate kinase}}
−
{{#set: common name=Proteasome subunit beta type}}
+
{{#set: ec number=EC-2.7.4.6}}
−
{{#set: ec number=EC-3.4.25.1}}
+
{{#set: gene associated=CHC_T00009258001_1|CHC_T00009233001|CHC_T00009258001|CHC_T00009233001_1}}
−
{{#set: gene associated=CHC_T00009544001_1|CHC_T00008987001_1|CHC_T00009373001_1|CHC_T00005811001_1|CHC_T00005699001_1|CHC_T00008941001_1|CHC_T00008367001_1|CHC_T00008406001_1|CHC_T00009346001_1|CHC_T00008406001|CHC_T00008987001|CHC_T00009004001_1|CHC_T00009185001_1|CHC_T00005235001_1}}
+
{{#set: in pathway=PWY0-166|PWY-7197|PWY-7210|PWY-7184|PWY-7198|PWY-6545}}
−
{{#set: in pathway=}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction source=galdieria.sulphuraria}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=original_genome}}
+

Latest revision as of 16:29, 9 January 2019

Reaction DCDPKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • nucleoside-diphosphate kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 dCDP[c] + 1 ATP[c] => 1 dCTP[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): PWY0-166
    • 12 reactions found over 17 reactions in the full pathway
  • PWY-7197, pyrimidine deoxyribonucleotide phosphorylation: PWY-7197
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP: PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I: PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7198, pyrimidine deoxyribonucleotides de novo biosynthesis IV: PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III: PWY-6545
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=DCDPKIN-RXN&oldid=21827"