Difference between revisions of "RXN-16134"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN] == * direction: ** L...")
 
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16134 RXN-16134] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** acyl-CoA oxidase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.3.25 EC-3.1.3.25]
+
** [http://enzyme.expasy.org/EC/1.3.3.6 EC-1.3.3.6]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[1-L-MYO-INOSITOL-1-P]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[MYO-INOSITOL]][c]
+
** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[CPD-17385]][c] '''=>''' 1 [[CPD-17386]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 1D-myo-inositol 3-monophosphate[c] '''=>''' 1 phosphate[c] '''+''' 1 myo-inositol[c]
+
** 1 oxygen[c] '''+''' 1 (6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA[c] '''=>''' 1 (2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA[c] '''+''' 1 hydrogen peroxide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00001291001_1]]
+
* Gene: [[CHC_T00008400001]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[annotation-original_genome]]
−
** [[pantograph]]-[[a.taliana]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[CHC_T00007726001_1]]
+
* Gene: [[CHC_T00008478001_1]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
* [[CHC_T00002260001_1]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
* Gene: [[CHC_T00009142001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00008400001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00009142001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00007910001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00008935001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00009531001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00009531001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00008935001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-2301]], myo-inositol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2301 PWY-2301]
+
* [[PWY-7606]], docosahexaenoate biosynthesis III (6-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7606 PWY-7606]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''7''' reactions found over '''14''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-galdieria.sulphuraria]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
−
*** [[a.taliana]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30742 30742]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01187 R01187]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P20456 P20456]
 
−
** [http://www.uniprot.org/uniprot/P0ADG4 P0ADG4]
 
−
** [http://www.uniprot.org/uniprot/P29218 P29218]
 
−
** [http://www.uniprot.org/uniprot/P54928 P54928]
 
−
** [http://www.uniprot.org/uniprot/P54927 P54927]
 
−
** [http://www.uniprot.org/uniprot/O49071 O49071]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-3.1.3.25}}
+
{{#set: common name=acyl-CoA oxidase}}
−
{{#set: gene associated=CHC_T00001291001_1|CHC_T00007726001_1|CHC_T00002260001_1}}
+
{{#set: ec number=EC-1.3.3.6}}
−
{{#set: in pathway=PWY-2301}}
+
{{#set: gene associated=CHC_T00008400001|CHC_T00008478001_1|CHC_T00009142001|CHC_T00008400001_1|CHC_T00009142001_1|CHC_T00007910001_1|CHC_T00008935001_1|CHC_T00009531001|CHC_T00009531001_1|CHC_T00008935001}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=PWY-7606}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}
+
{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 17:32, 9 January 2019

Reaction RXN-16134

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • acyl-CoA oxidase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 oxygen[c] + 1 (6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA[c] => 1 (2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA[c] + 1 hydrogen peroxide[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7606, docosahexaenoate biosynthesis III (6-desaturase, mammals): PWY-7606
    • 7 reactions found over 14 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-16134&oldid=21897"