Difference between revisions of "RXN-9140"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=S-ADENMETSYN-RXN S-ADENMETSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** S-adenosylmet...")
 
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=S-ADENMETSYN-RXN S-ADENMETSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9140 RXN-9140] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** S-adenosylmethionine synthetase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.6 EC-2.5.1.6]
+
** [http://enzyme.expasy.org/EC/4.2.3.152 EC-4.2.3.152]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[MET]][c] '''=>''' 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[PPI]][c]
+
** 1 [[CPD-19339]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[CPD-9663]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 H2O[c] '''+''' 1 L-methionine[c] '''=>''' 1 S-adenosyl-L-methionine[c] '''+''' 1 phosphate[c] '''+''' 1 diphosphate[c]
+
** 1 α-D-sedoheptulopyranose 7-phosphate[c] '''=>''' 1 phosphate[c] '''+''' 1 2-epi-5-epi-valiolone[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00008826001]]
+
* Gene: [[CHC_T00009338001_1]]
−
** ORIGINAL_GENOME
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
***AUTOMATED-NAME-MATCH
+
−
* [[CHC_T00008826001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
** [[pantograph]]-[[a.taliana]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[SAM-PWY]], S-adenosyl-L-methionine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SAM-PWY SAM-PWY]
+
* [[PWY-7752]], gadusol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7752 PWY-7752]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[METHIONINE-DEG1-PWY]], L-methionine degradation I (to L-homocysteine): [http://metacyc.org/META/NEW-IMAGE?object=METHIONINE-DEG1-PWY METHIONINE-DEG1-PWY]
+
* [[PWY-5818]], validamycin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5818 PWY-5818]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''13''' reactions in the full pathway
−
* [[ETHYL-PWY]], ethylene biosynthesis I (plants): [http://metacyc.org/META/NEW-IMAGE?object=ETHYL-PWY ETHYL-PWY]
+
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-5912]], 2'-deoxymugineic acid phytosiderophore biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5912 PWY-5912]
+
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-5041]], S-adenosyl-L-methionine cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5041 PWY-5041]
+
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
−
*** [[a.taliana]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[original_genome]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21080 21080]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00177 R00177]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P19358 P19358]
 
−
** [http://www.uniprot.org/uniprot/P18298 P18298]
 
−
** [http://www.uniprot.org/uniprot/Q91X83 Q91X83]
 
−
** [http://www.uniprot.org/uniprot/Q9PNJ8 Q9PNJ8]
 
−
** [http://www.uniprot.org/uniprot/P54419 P54419]
 
−
** [http://www.uniprot.org/uniprot/P56460 P56460]
 
−
** [http://www.uniprot.org/uniprot/Q9JVV6 Q9JVV6]
 
−
** [http://www.uniprot.org/uniprot/Q9CEE0 Q9CEE0]
 
−
** [http://www.uniprot.org/uniprot/O50163 O50163]
 
−
** [http://www.uniprot.org/uniprot/P43762 P43762]
 
−
** [http://www.uniprot.org/uniprot/P23686 P23686]
 
−
** [http://www.uniprot.org/uniprot/P17562 P17562]
 
−
** [http://www.uniprot.org/uniprot/Q7M4Y8 Q7M4Y8]
 
−
** [http://www.uniprot.org/uniprot/Q9S992 Q9S992]
 
−
** [http://www.uniprot.org/uniprot/Q90862 Q90862]
 
−
** [http://www.uniprot.org/uniprot/P13444 P13444]
 
−
** [http://www.uniprot.org/uniprot/P31153 P31153]
 
−
** [http://www.uniprot.org/uniprot/Q00266 Q00266]
 
−
** [http://www.uniprot.org/uniprot/P43281 P43281]
 
−
** [http://www.uniprot.org/uniprot/P40320 P40320]
 
−
** [http://www.uniprot.org/uniprot/P43280 P43280]
 
−
** [http://www.uniprot.org/uniprot/P43282 P43282]
 
−
** [http://www.uniprot.org/uniprot/P48498 P48498]
 
−
** [http://www.uniprot.org/uniprot/P10659 P10659]
 
−
** [http://www.uniprot.org/uniprot/Q39465 Q39465]
 
−
** [http://www.uniprot.org/uniprot/P48466 P48466]
 
−
** [http://www.uniprot.org/uniprot/P49612 P49612]
 
−
** [http://www.uniprot.org/uniprot/P49613 P49613]
 
−
** [http://www.uniprot.org/uniprot/P78003 P78003]
 
−
** [http://www.uniprot.org/uniprot/Q49070 Q49070]
 
−
** [http://www.uniprot.org/uniprot/P0A817 P0A817]
 
−
** [http://www.uniprot.org/uniprot/P50299 P50299]
 
−
** [http://www.uniprot.org/uniprot/O22350 O22350]
 
−
** [http://www.uniprot.org/uniprot/P24260 P24260]
 
−
** [http://www.uniprot.org/uniprot/O60198 O60198]
 
−
** [http://www.uniprot.org/uniprot/Q12642 Q12642]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=S-adenosylmethionine synthetase}}
+
{{#set: ec number=EC-4.2.3.152}}
−
{{#set: ec number=EC-2.5.1.6}}
+
{{#set: gene associated=CHC_T00009338001_1}}
−
{{#set: gene associated=CHC_T00008826001|CHC_T00008826001_1}}
+
{{#set: in pathway=PWY-7752|PWY-5818}}
−
{{#set: in pathway=SAM-PWY|METHIONINE-DEG1-PWY|ETHYL-PWY|PWY-5912|PWY-5041}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=original_genome}}
 

Latest revision as of 17:34, 9 January 2019

Reaction RXN-9140

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 α-D-sedoheptulopyranose 7-phosphate[c] => 1 phosphate[c] + 1 2-epi-5-epi-valiolone[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7752, gadusol biosynthesis: PWY-7752
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5818, validamycin biosynthesis: PWY-5818
    • 1 reactions found over 13 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-9140&oldid=21932"