Difference between revisions of "GCVP-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.8.15-RXN 2.7.8.15-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.o...")
 
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.8.15-RXN 2.7.8.15-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVP-RXN GCVP-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 +
* common name:
 +
** glycine dehydrogenase (decarboxylating), mitochondrial precursor
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.8.15 EC-2.7.8.15]
+
** [http://enzyme.expasy.org/EC/1.4.4.2 EC-1.4.4.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[DOLICHOLP]][c] '''+''' 1 [[UDP-N-ACETYL-D-GLUCOSAMINE]][c] '''=>''' 1 [[CPD-190]][c] '''+''' 1 [[UMP]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[PROTEIN-LIPOYLLYSINE]][c] '''+''' 1 [[GLY]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a dolichyl phosphate[c] '''+''' 1 UDP-N-acetyl-&alpha;-D-glucosamine[c] '''=>''' 1 N-acetyl-&alpha;-D-glucosaminyl-diphosphodolichol[c] '''+''' 1 UMP[c]
+
** 1 H+[c] '''+''' 1 a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine[c] '''+''' 1 glycine[c] '''<=>''' 1 CO2[c] '''+''' 1 a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00006227001_1]]
+
* Gene: [[CHC_T00009122001]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[annotation-original_genome]]
−
** [[pantograph]]-[[a.taliana]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[CHC_T00007237001_1]]
+
* Gene: [[CHC_T00007347001_1]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
** [[pantograph]]-[[a.taliana]]
+
* Gene: [[CHC_T00005686001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00009122001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00007880001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00007762001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00007428001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00008727001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]], protein N-glycosylation (eukaryotic, high mannose): [http://metacyc.org/META/NEW-IMAGE?object=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]
+
* [[GLYCINE-SYN2-PWY]], glycine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE-SYN2-PWY GLYCINE-SYN2-PWY]
−
** '''12''' reactions found over '''19''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[GLYCLEAV-PWY]], glycine cleavage: [http://metacyc.org/META/NEW-IMAGE?object=GLYCLEAV-PWY GLYCLEAV-PWY]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-galdieria.sulphuraria]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
−
*** [[a.taliana]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13289 13289]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01007 R01007]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03425 R03425]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P07286 P07286]
+
** [http://www.uniprot.org/uniprot/P26969 P26969]
−
** [http://www.uniprot.org/uniprot/P23338 P23338]
+
** [http://www.uniprot.org/uniprot/Q9UXT1 Q9UXT1]
−
** [http://www.uniprot.org/uniprot/P42864 P42864]
+
** [http://www.uniprot.org/uniprot/Q9JT86 Q9JT86]
−
** [http://www.uniprot.org/uniprot/P39465 P39465]
+
** [http://www.uniprot.org/uniprot/Q9UXT0 Q9UXT0]
−
** [http://www.uniprot.org/uniprot/Q9UY90 Q9UY90]
+
** [http://www.uniprot.org/uniprot/P23378 P23378]
−
** [http://www.uniprot.org/uniprot/Q58513 Q58513]
+
** [http://www.uniprot.org/uniprot/P33195 P33195]
−
** [http://www.uniprot.org/uniprot/P42867 P42867]
+
** [http://www.uniprot.org/uniprot/O80988 O80988]
−
** [http://www.uniprot.org/uniprot/P42881 P42881]
+
** [http://www.uniprot.org/uniprot/Q94B78 Q94B78]
−
** [http://www.uniprot.org/uniprot/P96000 P96000]
+
** [http://www.uniprot.org/uniprot/O32915 O32915]
−
** [http://www.uniprot.org/uniprot/Q9M2M5 Q9M2M5]
+
** [http://www.uniprot.org/uniprot/O22575 O22575]
−
** [http://www.uniprot.org/uniprot/O22211 O22211]
+
{{#set: direction=REVERSIBLE}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: common name=glycine dehydrogenase (decarboxylating), mitochondrial precursor}}
−
{{#set: ec number=EC-2.7.8.15}}
+
{{#set: ec number=EC-1.4.4.2}}
−
{{#set: gene associated=CHC_T00006227001_1|CHC_T00007237001_1}}
+
{{#set: gene associated=CHC_T00009122001|CHC_T00007347001_1|CHC_T00005686001_1|CHC_T00009122001_1|CHC_T00007880001_1|CHC_T00007762001_1|CHC_T00007428001_1|CHC_T00008727001_1}}
−
{{#set: in pathway=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS}}
+
{{#set: in pathway=GLYCINE-SYN2-PWY|GLYCLEAV-PWY}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
−
{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 17:37, 9 January 2019

Reaction GCVP-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • glycine dehydrogenase (decarboxylating), mitochondrial precursor
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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