Difference between revisions of "TRYPTOPHAN--TRNA-LIGASE-RXN"

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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5641 RXN-5641] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPTOPHAN--TRNA-LIGASE-RXN TRYPTOPHAN--TRNA-LIGASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** Tryptophan--tRNA ligase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.1.1 EC-4.1.1]
+
** [http://enzyme.expasy.org/EC/6.1.1.2 EC-6.1.1.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[SER]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[ETHANOL-AMINE]][c]
+
** 1 [[TRP]][c] '''+''' 1 [[TRP-tRNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Charged-TRP-tRNAs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-serine[c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 ethanolamine[c]
+
** 1 L-tryptophan[c] '''+''' 1 a tRNAtrp[c] '''+''' 1 ATP[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 an L-tryptophanyl-[tRNAtrp][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[CHC_T00010058001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00002342001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00010058001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7782]], plasmalogen biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7782 PWY-7782]
+
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
−
** '''7''' reactions found over '''16''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
−
* [[PWY4FS-6]], phosphatidylethanolamine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-6 PWY4FS-6]
+
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-3385]], choline biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3385 PWY-3385]
+
−
** '''2''' reactions found over '''6''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-galdieria.sulphuraria]]
−
*** [[original_genome]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24080 24080]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P23381 P23381]
 +
** [http://www.uniprot.org/uniprot/Q9ZD76 Q9ZD76]
 +
** [http://www.uniprot.org/uniprot/O84589 O84589]
 +
** [http://www.uniprot.org/uniprot/Q9PIB4 Q9PIB4]
 +
** [http://www.uniprot.org/uniprot/Q9CJD1 Q9CJD1]
 +
** [http://www.uniprot.org/uniprot/P43835 P43835]
 +
** [http://www.uniprot.org/uniprot/Q9Z7A4 Q9Z7A4]
 +
** [http://www.uniprot.org/uniprot/Q9WYW2 Q9WYW2]
 +
** [http://www.uniprot.org/uniprot/O26352 O26352]
 +
** [http://www.uniprot.org/uniprot/O51038 O51038]
 +
** [http://www.uniprot.org/uniprot/Q9ZJX4 Q9ZJX4]
 +
** [http://www.uniprot.org/uniprot/Q9JTQ0 Q9JTQ0]
 +
** [http://www.uniprot.org/uniprot/Q58810 Q58810]
 +
** [http://www.uniprot.org/uniprot/O83640 O83640]
 +
** [http://www.uniprot.org/uniprot/P67590 P67590]
 +
** [http://www.uniprot.org/uniprot/O67115 O67115]
 +
** [http://www.uniprot.org/uniprot/P47372 P47372]
 +
** [http://www.uniprot.org/uniprot/P32921 P32921]
 +
** [http://www.uniprot.org/uniprot/Q12109 Q12109]
 +
** [http://www.uniprot.org/uniprot/Q49901 Q49901]
 +
** [http://www.uniprot.org/uniprot/P75510 P75510]
 +
** [http://www.uniprot.org/uniprot/O42875 O42875]
 +
** [http://www.uniprot.org/uniprot/O96771 O96771]
 +
** [http://www.uniprot.org/uniprot/P17248 P17248]
 +
** [http://www.uniprot.org/uniprot/P21656 P21656]
 +
** [http://www.uniprot.org/uniprot/P04803 P04803]
 +
** [http://www.uniprot.org/uniprot/P00954 P00954]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03664 R03664]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-4.1.1}}
+
{{#set: common name=Tryptophan--tRNA ligase}}
−
{{#set: in pathway=PWY-7782|PWY4FS-6|PWY-3385}}
+
{{#set: ec number=EC-6.1.1.2}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: gene associated=CHC_T00010058001_1|CHC_T00002342001_1|CHC_T00010058001}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: in pathway=TRNA-CHARGING-PWY}}
−
{{#set: reconstruction source=original_genome}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 16:41, 9 January 2019

Reaction TRYPTOPHAN--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Tryptophan--tRNA ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-tryptophan[c] + 1 a tRNAtrp[c] + 1 ATP[c] => 1 AMP[c] + 1 diphosphate[c] + 1 an L-tryptophanyl-[tRNAtrp][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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