Difference between revisions of "PWY-7117"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IGPSYN-RXN IGPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** indole-3-glycerol phospha...")
 
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IGPSYN-RXN IGPSYN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117] ==
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* direction:
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** LEFT-TO-RIGHT
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* common name:
 
* common name:
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** indole-3-glycerol phosphate synthase
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** C4 photosynthetic carbon assimilation cycle, PEPCK type
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* ec number:
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* taxonomic range:
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** [http://enzyme.expasy.org/EC/4.1.1.48 EC-4.1.1.48]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3398 TAX-3398]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4479 TAX-4479]
 
* Synonym(s):
 
* Synonym(s):
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** C4 photosynthesis, PEPCK type
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''7''' reactions found over '''10''' reactions in the full pathway
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** 1 [[PROTON]][c] '''+''' 1 [[CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[WATER]][c]
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* [[ASPAMINOTRANS-RXN]]
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* With common name(s):
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** 8 associated gene(s):
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** 1 H+[c] '''+''' 1 1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate[c] '''=>''' 1 CO2[c] '''+''' 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] '''+''' 1 H2O[c]
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*** [[CHC_T00010017001]]
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*** [[CHC_T00005085001_1]]
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== Genes associated with this reaction  ==
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*** [[CHC_T00008432001]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[CHC_T00006498001_1]]
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* [[CHC_T00008561001]]
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*** [[CHC_T00009477001]]
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** ORIGINAL_GENOME
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*** [[CHC_T00003344001_1]]
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***AUTOMATED-NAME-MATCH
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*** [[CHC_T00009477001_1]]
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* [[CHC_T00008561001_1]]
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*** [[CHC_T00010197001]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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** 4 reconstruction source(s) associated:
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** [[pantograph]]-[[a.taliana]]
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*** [[orthology-galdieria.sulphuraria]]
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== Pathways  ==
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*** [[annotation-original_genome]]
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* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
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*** [[orthology-arabidopsis_thaliana]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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*** [[orthology-ectocarpus_siliculosus]]
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== Reconstruction information  ==
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* [[MALATE-DEHYDROGENASE-NADP+-RXN]]
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* [[orthology]]:
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** 2 associated gene(s):
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** [[pantograph]]:
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*** [[CHC_T00008878001]]
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*** [[galdieria.sulphuraria]]
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*** [[CHC_T00009563001]]
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*** [[a.taliana]]
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** 1 reconstruction source(s) associated:
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* [[annotation]]:
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*** [[annotation-original_genome]]
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** [[pathwaytools]]:
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* [[MALIC-NADP-RXN]]
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*** [[original_genome]]
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** 2 associated gene(s):
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*** [[CHC_T00008878001_1]]
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*** [[CHC_T00009563001_1]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[PEPCARBOX-RXN]]
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** 1 associated gene(s):
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*** [[CHC_T00008437001_1]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN]]
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** 2 associated gene(s):
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*** [[CHC_T00008789001_1]]
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*** [[CHC_T00008992001_1]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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* [[RXN-13697]]
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** 8 associated gene(s):
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*** [[CHC_T00006498001_1]]
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*** [[CHC_T00003344001_1]]
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*** [[CHC_T00008432001]]
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*** [[CHC_T00010197001]]
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*** [[CHC_T00010017001]]
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*** [[CHC_T00005085001_1]]
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*** [[CHC_T00009477001_1]]
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*** [[CHC_T00009477001]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[RXN0-5224]]
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** 6 associated gene(s):
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*** [[CHC_T00010321001_1]]
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*** [[CHC_T00010062001_1]]
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*** [[CHC_T00002086001_1]]
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*** [[CHC_T00010311001_1]]
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*** [[CHC_T00007098001_1]]
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*** [[CHC_T00010321001]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-ectocarpus_siliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=ALANINE-AMINOTRANSFERASE-RXN ALANINE-AMINOTRANSFERASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOXYKIN-RXN PEPCARBOXYKIN-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13698 RXN-13698]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: common name=C4 photosynthetic carbon assimilation cycle, PEPCK type}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23476 23476]
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{{#set: taxonomic range=TAX-3398}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-4479}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03508 R03508]
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{{#set: common name=C4 photosynthesis, PEPCK type}}
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* UNIPROT:
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{{#set: reaction found=7}}
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** [http://www.uniprot.org/uniprot/P42393 P42393]
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{{#set: total reaction=10}}
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** [http://www.uniprot.org/uniprot/P20577 P20577]
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{{#set: completion rate=70.0}}
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** [http://www.uniprot.org/uniprot/P18304 P18304]
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** [http://www.uniprot.org/uniprot/Q06121 Q06121]
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** [http://www.uniprot.org/uniprot/Q9V1G3 Q9V1G3]
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** [http://www.uniprot.org/uniprot/P20578 P20578]
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** [http://www.uniprot.org/uniprot/Q9PI11 Q9PI11]
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** [http://www.uniprot.org/uniprot/Q58328 Q58328]
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** [http://www.uniprot.org/uniprot/Q9JSN4 Q9JSN4]
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** [http://www.uniprot.org/uniprot/P03964 P03964]
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** [http://www.uniprot.org/uniprot/P00910 P00910]
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** [http://www.uniprot.org/uniprot/P00909 P00909]
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** [http://www.uniprot.org/uniprot/P00911 P00911]
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** [http://www.uniprot.org/uniprot/P17217 P17217]
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** [http://www.uniprot.org/uniprot/P20409 P20409]
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** [http://www.uniprot.org/uniprot/P00937 P00937]
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** [http://www.uniprot.org/uniprot/P00908 P00908]
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** [http://www.uniprot.org/uniprot/P05328 P05328]
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** [http://www.uniprot.org/uniprot/P06531 P06531]
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** [http://www.uniprot.org/uniprot/P18483 P18483]
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** [http://www.uniprot.org/uniprot/P25170 P25170]
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** [http://www.uniprot.org/uniprot/P26938 P26938]
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** [http://www.uniprot.org/uniprot/P24773 P24773]
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** [http://www.uniprot.org/uniprot/Q01999 Q01999]
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** [http://www.uniprot.org/uniprot/Q9YGB5 Q9YGB5]
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** [http://www.uniprot.org/uniprot/Q9S591 Q9S591]
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** [http://www.uniprot.org/uniprot/Q9X7C7 Q9X7C7]
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** [http://www.uniprot.org/uniprot/Q92370 Q92370]
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** [http://www.uniprot.org/uniprot/Q9ZFA7 Q9ZFA7]
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** [http://www.uniprot.org/uniprot/P94327 P94327]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=indole-3-glycerol phosphate synthase}}
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{{#set: ec number=EC-4.1.1.48}}
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{{#set: gene associated=CHC_T00008561001|CHC_T00008561001_1}}
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{{#set: in pathway=TRPSYN-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=original_genome}}
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Latest revision as of 16:36, 9 January 2019

Pathway PWY-7117

  • common name:
    • C4 photosynthetic carbon assimilation cycle, PEPCK type
  • taxonomic range:
  • Synonym(s):
    • C4 photosynthesis, PEPCK type

Reaction(s) found

7 reactions found over 10 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PWY-7117&oldid=21981"