Difference between revisions of "PROLINE--TRNA-LIGASE-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene CHC_1145 == * left end position: ** 175326 * transcription direction: ** NEGATIVE * right end position: ** 175676 * common name: ** ftrB * centisome...")
 
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene CHC_1145 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROLINE--TRNA-LIGASE-RXN PROLINE--TRNA-LIGASE-RXN] ==
−
* left end position:
+
* direction:
−
** 175326
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
−
** NEGATIVE
+
−
* right end position:
+
−
** 175676
+
 
* common name:
 
* common name:
−
** ftrB
+
** proline--tRNA ligase
−
* centisome position:
+
** prolyl-tRNA synthetase
−
** 97.35682   
+
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.1.1.15 EC-6.1.1.15]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[RXN-9944]]
+
* With identifiers:
−
** original_genome
+
** 1 [[PRO-tRNAs]][c] '''+''' 1 [[PRO]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Charged-PRO-tRNAs]][c]
−
***automated-name-match
+
* With common name(s):
−
== Pathways associated ==
+
** 1 a tRNApro[c] '''+''' 1 L-proline[c] '''+''' 1 ATP[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 an L-prolyl-[tRNApro][c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[CHC_T00008394001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00008394001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00009364001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00009364001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
== Pathways ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=175326}}
+
* RHEA:
−
{{#set: transcription direction=NEGATIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14305 14305]
−
{{#set: right end position=175676}}
+
* UNIPROT:
−
{{#set: common name=ftrB}}
+
** [http://www.uniprot.org/uniprot/O51363 O51363]
−
{{#set: centisome position=97.35682    }}
+
** [http://www.uniprot.org/uniprot/O58734 O58734]
−
{{#set: reaction associated=RXN-9944}}
+
** [http://www.uniprot.org/uniprot/Q9ZMJ6 Q9ZMJ6]
 +
** [http://www.uniprot.org/uniprot/P43830 P43830]
 +
** [http://www.uniprot.org/uniprot/P47525 P47525]
 +
** [http://www.uniprot.org/uniprot/O26708 O26708]
 +
** [http://www.uniprot.org/uniprot/Q9JU09 Q9JU09]
 +
** [http://www.uniprot.org/uniprot/Q58635 Q58635]
 +
** [http://www.uniprot.org/uniprot/P56124 P56124]
 +
** [http://www.uniprot.org/uniprot/O83195 O83195]
 +
** [http://www.uniprot.org/uniprot/Q9Z851 Q9Z851]
 +
** [http://www.uniprot.org/uniprot/O31755 O31755]
 +
** [http://www.uniprot.org/uniprot/P36431 P36431]
 +
** [http://www.uniprot.org/uniprot/Q9ZDE7 Q9ZDE7]
 +
** [http://www.uniprot.org/uniprot/Q9PHX1 Q9PHX1]
 +
** [http://www.uniprot.org/uniprot/Q9CDT4 Q9CDT4]
 +
** [http://www.uniprot.org/uniprot/Q9WYY4 Q9WYY4]
 +
** [http://www.uniprot.org/uniprot/P75382 P75382]
 +
** [http://www.uniprot.org/uniprot/Q49090 Q49090]
 +
** [http://www.uniprot.org/uniprot/P07814 P07814]
 +
** [http://www.uniprot.org/uniprot/P16659 P16659]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03661 R03661]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=proline--tRNA ligase}}
 +
{{#set: common name=prolyl-tRNA synthetase}}
 +
{{#set: ec number=EC-6.1.1.15}}
 +
{{#set: gene associated=CHC_T00008394001|CHC_T00008394001_1|CHC_T00009364001_1|CHC_T00009364001}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 16:47, 9 January 2019

Reaction PROLINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • proline--tRNA ligase
    • prolyl-tRNA synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a tRNApro[c] + 1 L-proline[c] + 1 ATP[c] => 1 AMP[c] + 1 diphosphate[c] + 1 an L-prolyl-[tRNApro][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PROLINE--TRNA-LIGASE-RXN&oldid=22259"