Difference between revisions of "COBALSYN-PWY"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-469 RXN66-469] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-methyl-branched fatty acy...")
 
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-469 RXN66-469] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=COBALSYN-PWY COBALSYN-PWY] ==
−
* direction:
+
−
** LEFT-TO-RIGHT
+
 
* common name:
 
* common name:
−
** 3-methyl-branched fatty acyl-CoA ligase
+
** adenosylcobalamin salvage from cobinamide I
−
** long-chain-fatty-acid-CoA ligase
+
* taxonomic range:
−
* ec number:
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
−
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** vitamin B12 biosynthesis
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''1''' reactions found over '''6''' reactions in the full pathway
−
** 1 [[3-Methyl-Saturated-Fatty-Acids]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[3-Methyl-Saturated-Fatty-Acyl-CoA]][c]
+
* [[BTUR2-RXN]]
−
* With common name(s):
+
** 1 associated gene(s):
−
** 1 a 3-methyl-branched 2,3,4-saturated fatty acid[c] '''+''' 1 coenzyme A[c] '''+''' 1 ATP[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 a 3-methyl-branched 2,3,4-saturated fatty acyl-CoA[c]
+
*** [[CHC_T00002690001_1]]
−
 
+
** 2 reconstruction source(s) associated:
−
== Genes associated with this reaction  ==
+
*** [[orthology-galdieria.sulphuraria]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[orthology-ectocarpus_siliculosus]]
−
* [[CHC_T00008811001]]
+
== Reaction(s) not found ==
−
** ORIGINAL_GENOME
+
* [http://metacyc.org/META/NEW-IMAGE?object=COBALAMIN5PSYN-RXN COBALAMIN5PSYN-RXN]
−
***AUTOMATED-NAME-MATCH
+
* [http://metacyc.org/META/NEW-IMAGE?object=COBINAMIDEKIN-RXN COBINAMIDEKIN-RXN]
−
* [[CHC_T00008160001_1]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=COBINPGUANYLYLTRANS-RXN COBINPGUANYLYLTRANS-RXN]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=DMBPPRIBOSYLTRANS-RXN DMBPPRIBOSYLTRANS-RXN]
−
* [[CHC_T00008811001_1]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8770 RXN-8770]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00008500001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00009428001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00009428001]]
+
−
** ORIGINAL_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
== Pathways  ==
+
−
* [[PWY66-387]], fatty acid α-oxidation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-387 PWY66-387]
+
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[galdieria.sulphuraria]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[original_genome]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* ECOCYC:
−
{{#set: common name=3-methyl-branched fatty acyl-CoA ligase}}
+
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=COBALSYN-PWY COBALSYN-PWY]
−
{{#set: common name=long-chain-fatty-acid-CoA ligase}}
+
{{#set: common name=adenosylcobalamin salvage from cobinamide I}}
−
{{#set: ec number=EC-6.2.1.3}}
+
{{#set: taxonomic range=TAX-1224}}
−
{{#set: gene associated=CHC_T00008811001|CHC_T00008160001_1|CHC_T00008811001_1|CHC_T00008500001_1|CHC_T00009428001_1|CHC_T00009428001}}
+
{{#set: common name=vitamin B12 biosynthesis}}
−
{{#set: in pathway=PWY66-387}}
+
{{#set: reaction found=1}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: total reaction=6}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: completion rate=17.0}}
−
{{#set: reconstruction source=galdieria.sulphuraria}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=original_genome}}
+

Latest revision as of 16:43, 9 January 2019

Pathway COBALSYN-PWY

  • common name:
    • adenosylcobalamin salvage from cobinamide I
  • taxonomic range:
  • Synonym(s):
    • vitamin B12 biosynthesis

Reaction(s) found

1 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=COBALSYN-PWY&oldid=22179"