Difference between revisions of "RXN0-2382"

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(Created page with "Category:Gene == Gene CHC_T00008396001 == * left end position: ** 57348 * transcription direction: ** POSITIVE * right end position: ** 58568 * centisome position: ** 18.8...")
 
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene CHC_T00008396001 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2382 RXN0-2382] ==
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* left end position:
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* direction:
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** 57348
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** tryptophan synthase alpha chain
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* right end position:
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** Tryptophan synthase subunit beta
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** 58568
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/4.2.1.122 EC-4.2.1.122]
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** 18.86832   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[PROTEIN-KINASE-RXN]]
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* With identifiers:
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** original_genome
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** 1 [[INDOLE]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c]
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***automated-name-match
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* With common name(s):
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== Pathways associated ==
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** 1 indole[c] '''+''' 1 L-serine[c] '''=>''' 1 L-tryptophan[c] '''+''' 1 H2O[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[CHC_T00007475001_1]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00008705001_1]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00008746001_1]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_1120]]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00008401001]]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00009102001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00008842001_1]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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== Pathways ==
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* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-original_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=57348}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26434 26434]
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{{#set: right end position=58568}}
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* LIGAND-RXN:
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{{#set: centisome position=18.86832    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R00674 R00674]
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{{#set: reaction associated=PROTEIN-KINASE-RXN}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=tryptophan synthase alpha chain}}
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{{#set: common name=Tryptophan synthase subunit beta}}
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{{#set: ec number=EC-4.2.1.122}}
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{{#set: gene associated=CHC_T00007475001_1|CHC_T00008705001_1|CHC_T00008746001_1|CHC_1120|CHC_T00008401001|CHC_T00009102001_1|CHC_T00008842001_1}}
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{{#set: in pathway=TRPSYN-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 16:51, 9 January 2019

Reaction RXN0-2382

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • tryptophan synthase alpha chain
    • Tryptophan synthase subunit beta
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 indole[c] + 1 L-serine[c] => 1 L-tryptophan[c] + 1 H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • TRPSYN-PWY, L-tryptophan biosynthesis: TRPSYN-PWY
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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