Difference between revisions of "PWY-5"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12669 RXN-12669] == * direction: ** LEFT-TO-RIGHT * common name: ** acyl-CoA oxidase * ec numbe...")
 
 
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[[Category:Reaction]]
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[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12669 RXN-12669] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5 PWY-5] ==
* direction:
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** LEFT-TO-RIGHT
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* common name:
 
* common name:
** acyl-CoA oxidase
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** canavanine biosynthesis
* ec number:
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* taxonomic range:
** [http://enzyme.expasy.org/EC/1.3.3.6 EC-1.3.3.6]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3803 TAX-3803]
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction Formula ==
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== Reaction(s) found ==
* With identifiers:
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'''3''' reactions found over '''4''' reactions in the full pathway
** 1 [[CPD-196]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[CPD0-2108]][c]
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* [[RXN-10]]
* With common name(s):
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** 2 associated gene(s):
** 1 octanoyl-CoA[c] '''+''' 1 oxygen[c] '''=>''' 1 hydrogen peroxide[c] '''+''' 1 trans-oct-2-enoyl-CoA[c]
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*** [[CHC_T00010073001]]
 
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*** [[CHC_T00010073001_1]]
== Genes associated with this reaction  ==
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** 3 reconstruction source(s) associated:
Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-galdieria.sulphuraria]]
* [[CHC_T00009531001_1]]
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*** [[annotation-original_genome]]
** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[orthology-ectocarpus_siliculosus]]
* [[CHC_T00009142001]]
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* [[RXN-22]]
** ORIGINAL_GENOME
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** 1 associated gene(s):
***AUTOMATED-NAME-MATCH
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*** [[CHC_T00004007001_1]]
* [[CHC_T00008400001]]
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** 2 reconstruction source(s) associated:
** ORIGINAL_GENOME
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*** [[orthology-galdieria.sulphuraria]]
***AUTOMATED-NAME-MATCH
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*** [[orthology-ectocarpus_siliculosus]]
* [[CHC_T00008478001_1]]
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* [[RXN-9]]
** [[pantograph]]-[[galdieria.sulphuraria]]
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** 1 associated gene(s):
* [[CHC_T00009531001]]
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*** [[CHC_T00005123001_1]]
** ORIGINAL_GENOME
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** 1 reconstruction source(s) associated:
***AUTOMATED-NAME-MATCH
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*** [[orthology-ectocarpus_siliculosus]]
* [[CHC_T00008935001]]
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== Reaction(s) not found ==
** ORIGINAL_GENOME
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-25 RXN-25]
***AUTOMATED-NAME-MATCH
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* [[CHC_T00007910001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[CHC_T00008400001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[CHC_T00008935001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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== Pathways  ==
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* [[PWY-6920]], 6-gingerol analog biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6920 PWY-6920]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[galdieria.sulphuraria]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[original_genome]]
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== External links  ==
 
== External links  ==
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=canavanine biosynthesis}}
{{#set: common name=acyl-CoA oxidase}}
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{{#set: taxonomic range=TAX-3803}}
{{#set: ec number=EC-1.3.3.6}}
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{{#set: reaction found=3}}
{{#set: gene associated=CHC_T00009531001_1|CHC_T00009142001|CHC_T00008400001|CHC_T00008478001_1|CHC_T00009531001|CHC_T00008935001|CHC_T00007910001_1|CHC_T00008400001_1|CHC_T00008935001_1}}
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{{#set: total reaction=4}}
{{#set: in pathway=PWY-6920}}
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{{#set: completion rate=75.0}}
{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=original_genome}}
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Latest revision as of 16:47, 9 January 2019

Pathway PWY-5

  • common name:
    • canavanine biosynthesis
  • taxonomic range:
  • Synonym(s):

Reaction(s) found

3 reactions found over 4 reactions in the full pathway

Reaction(s) not found

External links