Difference between revisions of "2.8.1.6-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene CHC_T00009370001_1 == * Synonym(s): == Reactions associated == * PGLUCISOM-RXN ** pantograph-galdieria.sulphuraria == Pathways associate...")
 
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene CHC_T00009370001_1 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.8.1.6-RXN 2.8.1.6-RXN] ==
 +
* direction:
 +
** LEFT-TO-RIGHT
 +
* common name:
 +
** biotin synthetase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.8.1.6 EC-2.8.1.6]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[PGLUCISOM-RXN]]
+
* With identifiers:
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** 2 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[DETHIOBIOTIN]][c] '''+''' 1 [[Sulfurated-Sulfur-Acceptors]][c] '''+''' 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''=>''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c] '''+''' 1 [[BIOTIN]][c] '''+''' 2 [[MET]][c] '''+''' 1 [[Unsulfurated-Sulfur-Acceptors]][c] '''+''' 2 [[CH33ADO]][c]
−
== Pathways associated ==
+
* With common name(s):
−
* [[RUMP-PWY]]
+
** 2 S-adenosyl-L-methionine[c] '''+''' 1 dethiobiotin[c] '''+''' 1 a sulfurated [sulfur carrier][c] '''+''' 2 a reduced [2Fe-2S] ferredoxin[c] '''=>''' 2 an oxidized [2Fe-2S] ferredoxin[c] '''+''' 1 biotin[c] '''+''' 2 L-methionine[c] '''+''' 1 an unsulfurated [sulfur carrier][c] '''+''' 2 5'-deoxyadenosine[c]
−
* [[GLYCOLYSIS]]
+
 
−
* [[PWY-3801]]
+
== Genes associated with this reaction  ==
−
* [[PWY-7385]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[P124-PWY]]
+
* Gene: [[CHC_T00009361001_1]]
−
* [[PWY-6142]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
* [[PWY-5659]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
* [[PWY-6981]]
+
* Gene: [[CHC_T00009361001]]
−
* [[P341-PWY]]
+
** Source: [[annotation-original_genome]]
−
* [[PWY-5384]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[PWY-7347]]
+
== Pathways  ==
−
* [[PWY66-399]]
+
* [[PWY0-1507]], biotin biosynthesis from 8-amino-7-oxononanoate I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1507 PWY0-1507]
−
* [[SUCSYN-PWY]]
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[UDPNAGSYN-PWY]]
+
* [[PWY-7380]], biotin biosynthesis from 8-amino-7-oxononanoate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7380 PWY-7380]
−
* [[PWY-621]]
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-622]]
+
== Reconstruction information  ==
−
* [[PWY-5054]]
+
* Category: [[orthology]]
−
* [[PWY-6992]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
* [[ANAGLYCOLYSIS-PWY]]
+
*** Tool: [[pantograph]]
−
* [[GLUCONEO-PWY]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
* [[PWY-7238]]
+
*** Tool: [[pantograph]]
−
* [[PWY-5514]]
+
* Category: [[annotation]]
−
* [[P122-PWY]]
+
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: reaction associated=PGLUCISOM-RXN}}
+
* RHEA:
−
{{#set: pathway associated=RUMP-PWY|GLYCOLYSIS|PWY-3801|PWY-7385|P124-PWY|PWY-6142|PWY-5659|PWY-6981|P341-PWY|PWY-5384|PWY-7347|PWY66-399|SUCSYN-PWY|UDPNAGSYN-PWY|PWY-621|PWY-622|PWY-5054|PWY-6992|ANAGLYCOLYSIS-PWY|GLUCONEO-PWY|PWY-7238|PWY-5514|P122-PWY}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22060 22060]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9JRW7 Q9JRW7]
 +
** [http://www.uniprot.org/uniprot/Q9PLZ3 Q9PLZ3]
 +
** [http://www.uniprot.org/uniprot/P53557 P53557]
 +
** [http://www.uniprot.org/uniprot/O67104 O67104]
 +
** [http://www.uniprot.org/uniprot/P44987 P44987]
 +
** [http://www.uniprot.org/uniprot/Q58692 Q58692]
 +
** [http://www.uniprot.org/uniprot/P0A506 P0A506]
 +
** [http://www.uniprot.org/uniprot/Q9Z6L5 Q9Z6L5]
 +
** [http://www.uniprot.org/uniprot/Q9JUE3 Q9JUE3]
 +
** [http://www.uniprot.org/uniprot/P46396 P46396]
 +
** [http://www.uniprot.org/uniprot/Q47862 Q47862]
 +
** [http://www.uniprot.org/uniprot/P19206 P19206]
 +
** [http://www.uniprot.org/uniprot/P32451 P32451]
 +
** [http://www.uniprot.org/uniprot/P54967 P54967]
 +
** [http://www.uniprot.org/uniprot/P46715 P46715]
 +
** [http://www.uniprot.org/uniprot/P73538 P73538]
 +
** [http://www.uniprot.org/uniprot/P12996 P12996]
 +
** [http://www.uniprot.org/uniprot/O59778 O59778]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01078 R01078]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=biotin synthetase}}
 +
{{#set: ec number=EC-2.8.1.6}}
 +
{{#set: gene associated=CHC_T00009361001_1|CHC_T00009361001}}
 +
{{#set: in pathway=PWY0-1507|PWY-7380}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 16:54, 9 January 2019

Reaction 2.8.1.6-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • biotin synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1507, biotin biosynthesis from 8-amino-7-oxononanoate I: PWY0-1507
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7380, biotin biosynthesis from 8-amino-7-oxononanoate II: PWY-7380
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=2.8.1.6-RXN&oldid=22442"