Difference between revisions of "CHC T00009480001"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11354 RXN-11354] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11354 RXN-11354] ==
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== Gene CHC_T00009480001 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 104770
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/5.2.1.12 EC-5.2.1.12]
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** NEGATIVE
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* right end position:
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** 105831
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* centisome position:
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** 20.028484   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[4.3.1.17-RXN]]
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** 1 [[CPD-7535]][c] '''=>''' 1 [[CPD-7526]][c]
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** Source: [[annotation-original_genome]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 9,15,9'-tri-cis-ζ-carotene[c] '''=>''' 1 9,9'-di-cis-ζ-carotene[c]
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* Reaction: [[RXN-15125]]
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** Source: [[annotation-original_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[Serine-threonine_dehydration_ASTERINA-330]]
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* [[CHC_T00001067001_1]]
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** Source: [[manual-pathmodel_inference_new_rxn]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* Reaction: [[Serine-threonine_dehydration_MAA2]]
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== Pathways  ==
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** Source: [[manual-pathmodel_inference_new_rxn]]
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* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
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== Pathways associated ==
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** '''8''' reactions found over '''8''' reactions in the full pathway
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* [[SERDEG-PWY]]
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== Reconstruction information  ==
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* [[PWY-5497]]
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* [[orthology]]:
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* [[PWY-3661]]
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** [[pantograph]]:
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*** [[galdieria.sulphuraria]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[original_genome]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=104770}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30970 30970]
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{{#set: transcription direction=NEGATIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=105831}}
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{{#set: ec number=EC-5.2.1.12}}
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{{#set: centisome position=20.028484    }}
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{{#set: gene associated=CHC_T00001067001_1}}
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{{#set: reaction associated=4.3.1.17-RXN|RXN-15125|Serine-threonine_dehydration_ASTERINA-330|Serine-threonine_dehydration_MAA2}}
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{{#set: in pathway=PWY-6475}}
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{{#set: pathway associated=SERDEG-PWY|PWY-5497|PWY-3661}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=original_genome}}
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Latest revision as of 16:48, 9 January 2019

Gene CHC_T00009480001

  • left end position:
    • 104770
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 105831
  • centisome position:
    • 20.028484
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=CHC_T00009480001&oldid=22288"