Difference between revisions of "CHC T00009428001"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-15 RXN66-15] == * direction: ** LEFT-TO-RIGHT * common name: ** 4,4-dimethyl-5α-cholest...")
 
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-15 RXN66-15] ==
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== Gene CHC_T00009428001 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 9673
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* common name:
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* transcription direction:
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** 4,4-dimethyl-5α-cholesta-8-en-3-β-ol 4-hydroxylase
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** POSITIVE
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* right end position:
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** 11664
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* centisome position:
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** 3.089172   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ACYLCOASYN-RXN]]
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** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[CPD-8610]][c] '''=>''' 1 [[NAD-P-OR-NOP]][c] '''+''' 1 [[CPD-8611]][c] '''+''' 1 [[WATER]][c]
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** Source: [[annotation-original_genome]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 oxygen[c] '''+''' 1 H+[c] '''+''' 1 NAD(P)H[c] '''+''' 1 4,4-dimethyl-5α-cholesta-8-en-3-β-ol[c] '''=>''' 1 NAD(P)+[c] '''+''' 1 4α-hydroxymethyl-4β-methyl-5α-cholesta-8-en-3β-ol[c] '''+''' 1 H2O[c]
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* Reaction: [[LINOLENOYL-RXN]]
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** Source: [[annotation-original_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[R223-RXN]]
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* [[CHC_T00010320001_1]]
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** Source: [[annotation-original_genome]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** Assignment: automated-name-match
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== Pathways ==
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* Reaction: [[RXN-12184]]
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* [[PWY66-3]], cholesterol biosynthesis II (via 24,25-dihydrolanosterol): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-3 PWY66-3]
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** Source: [[annotation-original_genome]]
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** '''14''' reactions found over '''22''' reactions in the full pathway
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*** Assignment: automated-name-match
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== Reconstruction information  ==
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* Reaction: [[RXN-12978]]
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* [[orthology]]:
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** Source: [[annotation-original_genome]]
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** [[pantograph]]:
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*** Assignment: automated-name-match
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*** [[galdieria.sulphuraria]]
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* Reaction: [[RXN-13290]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-13614]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-16380]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-16389]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-16393]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-16401]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-16402]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-16415]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-16418]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-7904]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-9623]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-9644]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-9673]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN0-7238]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN0-7239]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN0-7248]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN66-469]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN66-477]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN66-480]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN66-483]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN66-484]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[TRANS-RXN0-623]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-5971]]
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* [[PWY-7094]]
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* [[PWY-7724]]
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* [[PWY-6001]]
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* [[PWY-5972]]
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* [[PWY66-389]]
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* [[PWY-6873]]
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* [[PWY-6920]]
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* [[PWY66-388]]
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* [[P221-PWY]]
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* [[PWY-321]]
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* [[PWY66-387]]
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* [[PWY-5885]]
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* [[PWY-5147]]
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* [[PWY-1121]]
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* [[PWY-5136]]
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* [[PWY66-391]]
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* [[PWY-7033]]
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* [[PWY-5143]]
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* [[PWY-7288]]
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* [[PWY-5989]]
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* [[PWY-6000]]
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* [[FAO-PWY]]
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* [[PWY-6733]]
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* [[PWY-6803]]
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* [[PWY-7049]]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=9673}}
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{{#set: common name=4,4-dimethyl-5α-cholesta-8-en-3-β-ol 4-hydroxylase}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: gene associated=CHC_T00010320001_1}}
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{{#set: right end position=11664}}
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{{#set: in pathway=PWY66-3}}
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{{#set: centisome position=3.089172    }}
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{{#set: reconstruction category=orthology}}
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{{#set: reaction associated=ACYLCOASYN-RXN|LINOLENOYL-RXN|R223-RXN|RXN-12184|RXN-12978|RXN-13290|RXN-13614|RXN-16380|RXN-16389|RXN-16393|RXN-16401|RXN-16402|RXN-16415|RXN-16418|RXN-7904|RXN-9623|RXN-9644|RXN-9673|RXN0-7238|RXN0-7239|RXN0-7248|RXN66-469|RXN66-477|RXN66-480|RXN66-483|RXN66-484|TRANS-RXN0-623}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: pathway associated=PWY-5971|PWY-7094|PWY-7724|PWY-6001|PWY-5972|PWY66-389|PWY-6873|PWY-6920|PWY66-388|P221-PWY|PWY-321|PWY66-387|PWY-5885|PWY-5147|PWY-1121|PWY-5136|PWY66-391|PWY-7033|PWY-5143|PWY-7288|PWY-5989|PWY-6000|FAO-PWY|PWY-6733|PWY-6803|PWY-7049}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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Latest revision as of 15:07, 9 January 2019

Gene CHC_T00009428001

  • left end position:
    • 9673
  • transcription direction:
    • POSITIVE
  • right end position:
    • 11664
  • centisome position:
    • 3.089172
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=CHC_T00009428001&oldid=19858"