Difference between revisions of "TRPSYN-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANS-CINNAMATE-4-MONOOXYGENASE-RXN TRANS-CINNAMATE-4-MONOOXYGENASE-RXN] == * direction: ** LEFT-TO...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANS-CINNAMATE-4-MONOOXYGENASE-RXN TRANS-CINNAMATE-4-MONOOXYGENASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY] ==
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* direction:
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* common name:
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** LEFT-TO-RIGHT
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** L-tryptophan biosynthesis
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* ec number:
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* taxonomic range:
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** [http://enzyme.expasy.org/EC/1.14.13.11 EC-1.14.13.11]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3193 TAX-3193]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''6''' reactions found over '''6''' reactions in the full pathway
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** 1 [[NADPH]][c] '''+''' 1 [[CPD-674]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[COUMARATE]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[NADP]][c]
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* [[ANTHRANSYN-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 NADPH[c] '''+''' 1 trans-cinnamate[c] '''+''' 1 oxygen[c] '''+''' 1 H+[c] '''=>''' 1 4-coumarate[c] '''+''' 1 H2O[c] '''+''' 1 NADP+[c]
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*** [[CHC_T00004489001_1]]
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*** [[CHC_T00008898001_1]]
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== Genes associated with this reaction  ==
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** 3 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-galdieria.sulphuraria]]
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* [[CHC_T00009062001_1]]
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*** [[orthology-arabidopsis_thaliana]]
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** [[pantograph]]-[[a.taliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[CHC_T00008616001_1]]
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* [[IGPSYN-RXN]]
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** [[pantograph]]-[[a.taliana]]
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** 4 associated gene(s):
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* [[CHC_T00009499001_1]]
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*** [[CHC_T00000220001_1]]
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** [[pantograph]]-[[a.taliana]]
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*** [[CHC_T00004489001_1]]
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* [[CHC_T00010245001_1]]
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*** [[CHC_T00008561001]]
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** [[pantograph]]-[[a.taliana]]
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*** [[CHC_T00008561001_1]]
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* [[CHC_T00008663001_1]]
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** 4 reconstruction source(s) associated:
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** [[pantograph]]-[[a.taliana]]
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*** [[orthology-galdieria.sulphuraria]]
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* [[CHC_T00008813001_1]]
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*** [[annotation-original_genome]]
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** [[pantograph]]-[[a.taliana]]
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*** [[orthology-arabidopsis_thaliana]]
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* [[CHC_T00010004001_1]]
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*** [[orthology-ectocarpus_siliculosus]]
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** [[pantograph]]-[[a.taliana]]
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* [[PRAISOM-RXN]]
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* [[CHC_T00009131001_1]]
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** 1 associated gene(s):
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** [[pantograph]]-[[a.taliana]]
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*** [[CHC_T00003361001_1]]
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* [[CHC_T00008672001_1]]
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** 1 reconstruction source(s) associated:
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** [[pantograph]]-[[a.taliana]]
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*** [[orthology-arabidopsis_thaliana]]
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== Pathways  ==
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* [[PRTRANS-RXN]]
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* [[PWY1F-467]], phenylpropanoid biosynthesis, initial reactions: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-467 PWY1F-467]
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** 1 associated gene(s):
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** '''2''' reactions found over '''2''' reactions in the full pathway
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*** [[CHC_T00004022001_1]]
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* [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121]
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** 3 reconstruction source(s) associated:
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** '''7''' reactions found over '''19''' reactions in the full pathway
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*** [[orthology-galdieria.sulphuraria]]
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== Reconstruction information  ==
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*** [[orthology-arabidopsis_thaliana]]
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* [[orthology]]:
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*** [[orthology-ectocarpus_siliculosus]]
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** [[pantograph]]:
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* [[RXN0-2381]]
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*** [[a.taliana]]
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** 7 associated gene(s):
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*** [[CHC_T00009102001_1]]
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*** [[CHC_T00008842001_1]]
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*** [[CHC_T00008746001_1]]
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*** [[CHC_1120]]
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*** [[CHC_T00008705001_1]]
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*** [[CHC_T00008401001]]
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*** [[CHC_T00007475001_1]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[RXN0-2382]]
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** 7 associated gene(s):
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*** [[CHC_T00007475001_1]]
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*** [[CHC_T00008705001_1]]
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*** [[CHC_T00008746001_1]]
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*** [[CHC_1120]]
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*** [[CHC_T00008401001]]
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*** [[CHC_T00009102001_1]]
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*** [[CHC_T00008842001_1]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-ectocarpus_siliculosus]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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* ECOCYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10608 10608]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
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* LIGAND-RXN:
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* ARACYC:
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** [http://www.genome.jp/dbget-bin/www_bget?R02253 R02253]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
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* UNIPROT:
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{{#set: common name=L-tryptophan biosynthesis}}
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** [http://www.uniprot.org/uniprot/Q04468 Q04468]
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{{#set: taxonomic range=TAX-4751}}
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** [http://www.uniprot.org/uniprot/P37115 P37115]
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{{#set: taxonomic range=TAX-2157}}
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** [http://www.uniprot.org/uniprot/Q9S8R8 Q9S8R8]
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{{#set: taxonomic range=TAX-2}}
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** [http://www.uniprot.org/uniprot/P48522 P48522]
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{{#set: taxonomic range=TAX-3193}}
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** [http://www.uniprot.org/uniprot/Q42895 Q42895]
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{{#set: reaction found=6}}
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** [http://www.uniprot.org/uniprot/O81928 O81928]
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{{#set: total reaction=6}}
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** [http://www.uniprot.org/uniprot/O24315 O24315]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/Q43033 Q43033]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-1.14.13.11}}
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{{#set: gene associated=CHC_T00009062001_1|CHC_T00008616001_1|CHC_T00009499001_1|CHC_T00010245001_1|CHC_T00008663001_1|CHC_T00008813001_1|CHC_T00010004001_1|CHC_T00009131001_1|CHC_T00008672001_1}}
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{{#set: in pathway=PWY1F-467|PWY-1121}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=a.taliana}}
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Latest revision as of 15:06, 9 January 2019

Pathway TRPSYN-PWY

Reaction(s) found

6 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links





Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=TRPSYN-PWY&oldid=19827"