Difference between revisions of "ISOCITRATE-DEHYDROGENASE-NAD+-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9532 RXN-9532] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-dodecanoyl-[acyl-carrie...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9532 RXN-9532] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCITRATE-DEHYDROGENASE-NAD+-RXN ISOCITRATE-DEHYDROGENASE-NAD+-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 3-oxo-dodecanoyl-[acyl-carrier protein] reductase
+
** Isocitrate dehydrogenase, NAD-dependent
−
** beta-ketoacyl reductase
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** isocitrate dehydrogenase (NAD+) subunit 2, mitochondrial precursor
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** 3-oxoacyl-[acyl-carrier-protein] reductase
+
−
** 3-oxoacyl-(acyl-carrier-protein) reductase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/1.1.1.286 EC-1.1.1.286]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
+
** [http://enzyme.expasy.org/EC/1.1.1.41 EC-1.1.1.41]
−
** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[3-oxo-dodecanoyl-ACPs]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[R-3-hydroxydodecanoyl-ACPs]][c]
+
** 1 [[NAD]][c] '''+''' 1 [[THREO-DS-ISO-CITRATE]][c] '''=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 NADPH[c] '''+''' 1 a 3-oxo-dodecanoyl-[acp][c] '''=>''' 1 NADP+[c] '''+''' 1 a (3R)-3-hydroxydodecanoyl-[acp][c]
+
** 1 NAD+[c] '''+''' 1 D-threo-isocitrate[c] '''=>''' 1 2-oxoglutarate[c] '''+''' 1 NADH[c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00008477001]]
+
* Gene: [[CHC_T00008852001_1]]
−
** ORIGINAL_GENOME
+
** Source: [[orthology-galdieria.sulphuraria]]
−
***AUTOMATED-NAME-MATCH
+
* Gene: [[CHC_T00008852001]]
−
* [[CHC_T00008496001]]
+
** Source: [[annotation-original_genome]]
−
** ORIGINAL_GENOME
+
*** Assignment: AUTOMATED-NAME-MATCH
−
***AUTOMATED-NAME-MATCH
+
* Gene: [[CHC_T00009162001_1]]
−
* [[CHC_T00008517001_1]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
* Gene: [[CHC_T00009293001]]
−
* [[CHC_T00008557001]]
+
** Source: [[annotation-original_genome]]
−
** ORIGINAL_GENOME
+
*** Assignment: AUTOMATED-NAME-MATCH
−
***AUTOMATED-NAME-MATCH
+
* Gene: [[CHC_T00009293001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00009162001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
+
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''11''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
+
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
−
** '''22''' reactions found over '''31''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-galdieria.sulphuraria]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-original_genome]]
−
*** [[original_genome]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23632 23632]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P56472 P56472]
 +
** [http://www.uniprot.org/uniprot/P41566 P41566]
 +
** [http://www.uniprot.org/uniprot/P28834 P28834]
 +
** [http://www.uniprot.org/uniprot/P41565 P41565]
 +
** [http://www.uniprot.org/uniprot/P41564 P41564]
 +
** [http://www.uniprot.org/uniprot/P50213 P50213]
 +
** [http://www.uniprot.org/uniprot/Q7M3F1 Q7M3F1]
 +
** [http://www.uniprot.org/uniprot/P41563 P41563]
 +
** [http://www.uniprot.org/uniprot/Q28479 Q28479]
 +
** [http://www.uniprot.org/uniprot/Q28480 Q28480]
 +
** [http://www.uniprot.org/uniprot/O65852 O65852]
 +
** [http://www.uniprot.org/uniprot/O65501 O65501]
 +
** [http://www.uniprot.org/uniprot/O82004 O82004]
 +
** [http://www.uniprot.org/uniprot/O43837 O43837]
 +
** [http://www.uniprot.org/uniprot/O13696 O13696]
 +
** [http://www.uniprot.org/uniprot/Q9USP8 Q9USP8]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00709 R00709]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=3-oxo-dodecanoyl-[acyl-carrier protein] reductase}}
+
{{#set: common name=Isocitrate dehydrogenase, NAD-dependent}}
−
{{#set: common name=beta-ketoacyl reductase}}
+
{{#set: common name=isocitrate dehydrogenase (NAD+) subunit 2, mitochondrial precursor}}
−
{{#set: common name=3-oxoacyl-[acyl-carrier-protein] reductase}}
+
{{#set: ec number=EC-1.1.1.286}}
−
{{#set: common name=3-oxoacyl-(acyl-carrier-protein) reductase}}
+
{{#set: ec number=EC-1.1.1.41}}
−
{{#set: ec number=EC-2.3.1.86}}
+
{{#set: gene associated=CHC_T00008852001_1|CHC_T00008852001|CHC_T00009162001_1|CHC_T00009293001|CHC_T00009293001_1|CHC_T00009162001}}
−
{{#set: ec number=EC-2.3.1.85}}
+
{{#set: in pathway=PWY66-398|PWY-6549|PWY-5690}}
−
{{#set: ec number=EC-1.1.1.100}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: gene associated=CHC_T00008477001|CHC_T00008496001|CHC_T00008517001_1|CHC_T00008557001}}
+
{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome}}
−
{{#set: in pathway=PWY-5971|PWY-5994}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=galdieria.sulphuraria}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=original_genome}}
+

Latest revision as of 15:07, 9 January 2019

Reaction ISOCITRATE-DEHYDROGENASE-NAD+-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Isocitrate dehydrogenase, NAD-dependent
    • isocitrate dehydrogenase (NAD+) subunit 2, mitochondrial precursor
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY66-398, TCA cycle III (animals): PWY66-398
    • 11 reactions found over 11 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III: PWY-6549
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi): PWY-5690
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






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