Difference between revisions of "LYSINE--TRNA-LIGASE-RXN"

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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1224 RXN-1224] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSINE--TRNA-LIGASE-RXN LYSINE--TRNA-LIGASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** Lysyl-tRNA synthetase
 +
** lysine--tRNA ligase, cytoplasmic
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.4.1.M2 EC-2.4.1.M2]
+
** [http://enzyme.expasy.org/EC/6.1.1.6 EC-6.1.1.6]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[UDP-SULFOQUINOVOSE]][c] '''+''' 1 [[DIACYLGLYCEROL]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[UDP]][c] '''+''' 1 [[SULFOQUINOVOSYLDIACYLGLYCEROL]][c]
+
** 1 [[LYS-tRNAs]][c] '''+''' 1 [[LYS]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[Charged-LYS-tRNAs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 UDP-α-D-sulfoquinovopyranose[c] '''+''' 1 a 1,2-diacyl-sn-glycerol[c] '''=>''' 1 H+[c] '''+''' 1 UDP[c] '''+''' 1 an 6-sulfo-α-D-quinovosyl diacylglycerol[c]
+
** 1 a tRNAlys[c] '''+''' 1 L-lysine[c] '''+''' 1 ATP[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 an L-lysyl-[tRNAlys][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00003861001_1]]
+
* Gene: [[CHC_T00008917001]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00008917001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00008735001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWYQT-4427]], sulfoquinovosyl diacylglycerol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWYQT-4427 PWYQT-4427]
+
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-galdieria.sulphuraria]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R06867 R06867]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03658 R03658]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P41258 P41258]
 +
** [http://www.uniprot.org/uniprot/P46861 P46861]
 +
** [http://www.uniprot.org/uniprot/P47382 P47382]
 +
** [http://www.uniprot.org/uniprot/O57963 O57963]
 +
** [http://www.uniprot.org/uniprot/O51603 O51603]
 +
** [http://www.uniprot.org/uniprot/Q9JTT7 Q9JTT7]
 +
** [http://www.uniprot.org/uniprot/O83650 O83650]
 +
** [http://www.uniprot.org/uniprot/Q9X231 Q9X231]
 +
** [http://www.uniprot.org/uniprot/P43825 P43825]
 +
** [http://www.uniprot.org/uniprot/Q9ZDF8 Q9ZDF8]
 +
** [http://www.uniprot.org/uniprot/O84786 O84786]
 +
** [http://www.uniprot.org/uniprot/Q9Z6X5 Q9Z6X5]
 +
** [http://www.uniprot.org/uniprot/Q9CII7 Q9CII7]
 +
** [http://www.uniprot.org/uniprot/P56126 P56126]
 +
** [http://www.uniprot.org/uniprot/Q9ZMP8 Q9ZMP8]
 +
** [http://www.uniprot.org/uniprot/O67258 O67258]
 +
** [http://www.uniprot.org/uniprot/O84002 O84002]
 +
** [http://www.uniprot.org/uniprot/Q9RHV9 Q9RHV9]
 +
** [http://www.uniprot.org/uniprot/P32048 P32048]
 +
** [http://www.uniprot.org/uniprot/P37879 P37879]
 +
** [http://www.uniprot.org/uniprot/Q48986 Q48986]
 +
** [http://www.uniprot.org/uniprot/P0A8N7 P0A8N7]
 +
** [http://www.uniprot.org/uniprot/P37477 P37477]
 +
** [http://www.uniprot.org/uniprot/P75500 P75500]
 +
** [http://www.uniprot.org/uniprot/P95970 P95970]
 +
** [http://www.uniprot.org/uniprot/P73443 P73443]
 +
** [http://www.uniprot.org/uniprot/P15180 P15180]
 +
** [http://www.uniprot.org/uniprot/P0A8N3 P0A8N3]
 +
** [http://www.uniprot.org/uniprot/P0A8N5 P0A8N5]
 +
** [http://www.uniprot.org/uniprot/Q43776 Q43776]
 +
** [http://www.uniprot.org/uniprot/O74059 O74059]
 +
** [http://www.uniprot.org/uniprot/O30522 O30522]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-2.4.1.M2}}
+
{{#set: common name=Lysyl-tRNA synthetase}}
−
{{#set: gene associated=CHC_T00003861001_1}}
+
{{#set: common name=lysine--tRNA ligase, cytoplasmic}}
−
{{#set: in pathway=PWYQT-4427}}
+
{{#set: ec number=EC-6.1.1.6}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: gene associated=CHC_T00008917001|CHC_T00008917001_1|CHC_T00008735001_1}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: in pathway=TRNA-CHARGING-PWY}}
−
{{#set: reconstruction source=galdieria.sulphuraria}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 15:08, 9 January 2019

Reaction LYSINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Lysyl-tRNA synthetase
    • lysine--tRNA ligase, cytoplasmic
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a tRNAlys[c] + 1 L-lysine[c] + 1 ATP[c] => 1 diphosphate[c] + 1 AMP[c] + 1 an L-lysyl-[tRNAlys][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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