Difference between revisions of "LYSINE--TRNA-LIGASE-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=GLYCOCAT-PWY GLYCOCAT-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 T...")
 
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=GLYCOCAT-PWY GLYCOCAT-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSINE--TRNA-LIGASE-RXN LYSINE--TRNA-LIGASE-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** glycogen degradation I
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** Lysyl-tRNA synthetase
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** lysine--tRNA ligase, cytoplasmic
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* ec number:
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** [http://enzyme.expasy.org/EC/6.1.1.6 EC-6.1.1.6]
 
* Synonym(s):
 
* Synonym(s):
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** glycogen catabolism I
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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* '''7''' reaction(s) found
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* With identifiers:
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** [[RXN-9025]]
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** 1 [[LYS-tRNAs]][c] '''+''' 1 [[LYS]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[Charged-LYS-tRNAs]][c]
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** [[PHOSPHOGLUCMUT-RXN]]
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* With common name(s):
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** [[RXN0-5182]]
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** 1 a tRNAlys[c] '''+''' 1 L-lysine[c] '''+''' 1 ATP[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 an L-lysyl-[tRNAlys][c]
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** [[RXN0-5183]]
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** [[GLYCOPHOSPHORYL-RXN]]
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== Genes associated with this reaction  ==
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** [[AMYLOMALT-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** [[GLUCOKIN-RXN]]
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* Gene: [[CHC_T00008917001]]
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== Reaction(s) not found ==
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** Source: [[annotation-original_genome]]
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* '''1''' reaction(s) not found
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*** Assignment: AUTOMATED-NAME-MATCH
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5146 RXN0-5146]
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* Gene: [[CHC_T00008917001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00008735001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-original_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* ECOCYC:
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* LIGAND-RXN:
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=GLYCOCAT-PWY GLYCOCAT-PWY]
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** [http://www.genome.jp/dbget-bin/www_bget?R03658 R03658]
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{{#set: taxonomic range=TAX-2}}
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* UNIPROT:
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{{#set: common name=glycogen degradation I}}
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** [http://www.uniprot.org/uniprot/P41258 P41258]
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{{#set: common name=glycogen catabolism I}}
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** [http://www.uniprot.org/uniprot/P46861 P46861]
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{{#set: reaction found=7}}
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** [http://www.uniprot.org/uniprot/P47382 P47382]
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{{#set: reaction not found=1}}
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** [http://www.uniprot.org/uniprot/O57963 O57963]
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** [http://www.uniprot.org/uniprot/O51603 O51603]
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** [http://www.uniprot.org/uniprot/Q9JTT7 Q9JTT7]
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** [http://www.uniprot.org/uniprot/O83650 O83650]
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** [http://www.uniprot.org/uniprot/Q9X231 Q9X231]
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** [http://www.uniprot.org/uniprot/P43825 P43825]
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** [http://www.uniprot.org/uniprot/Q9ZDF8 Q9ZDF8]
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** [http://www.uniprot.org/uniprot/O84786 O84786]
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** [http://www.uniprot.org/uniprot/Q9Z6X5 Q9Z6X5]
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** [http://www.uniprot.org/uniprot/Q9CII7 Q9CII7]
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** [http://www.uniprot.org/uniprot/P56126 P56126]
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** [http://www.uniprot.org/uniprot/Q9ZMP8 Q9ZMP8]
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** [http://www.uniprot.org/uniprot/O67258 O67258]
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** [http://www.uniprot.org/uniprot/O84002 O84002]
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** [http://www.uniprot.org/uniprot/Q9RHV9 Q9RHV9]
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** [http://www.uniprot.org/uniprot/P32048 P32048]
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** [http://www.uniprot.org/uniprot/P37879 P37879]
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** [http://www.uniprot.org/uniprot/Q48986 Q48986]
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** [http://www.uniprot.org/uniprot/P0A8N7 P0A8N7]
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** [http://www.uniprot.org/uniprot/P37477 P37477]
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** [http://www.uniprot.org/uniprot/P75500 P75500]
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** [http://www.uniprot.org/uniprot/P95970 P95970]
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** [http://www.uniprot.org/uniprot/P73443 P73443]
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** [http://www.uniprot.org/uniprot/P15180 P15180]
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** [http://www.uniprot.org/uniprot/P0A8N3 P0A8N3]
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** [http://www.uniprot.org/uniprot/P0A8N5 P0A8N5]
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** [http://www.uniprot.org/uniprot/Q43776 Q43776]
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** [http://www.uniprot.org/uniprot/O74059 O74059]
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** [http://www.uniprot.org/uniprot/O30522 O30522]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Lysyl-tRNA synthetase}}
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{{#set: common name=lysine--tRNA ligase, cytoplasmic}}
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{{#set: ec number=EC-6.1.1.6}}
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{{#set: gene associated=CHC_T00008917001|CHC_T00008917001_1|CHC_T00008735001_1}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 15:08, 9 January 2019

Reaction LYSINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Lysyl-tRNA synthetase
    • lysine--tRNA ligase, cytoplasmic
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a tRNAlys[c] + 1 L-lysine[c] + 1 ATP[c] => 1 diphosphate[c] + 1 AMP[c] + 1 an L-lysyl-[tRNAlys][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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