Difference between revisions of "FORMATETHFLIG-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11269 RXN-11269] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11269 RXN-11269] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FORMATETHFLIG-RXN FORMATETHFLIG-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** formate--tetrahydrofolate ligase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.3.4.3 EC-6.3.4.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-674]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-12218]][c]
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** 1 [[FORMATE]][c] '''+''' 1 [[THF-GLU-N]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[FORMYL-THF-GLU-N]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 trans-cinnamate[c] '''+''' 1 H2O[c] '''=>''' 1 3-hydroxy-3-phenylpropanoate[c]
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** 1 formate[c] '''+''' 1 a tetrahydrofolate[c] '''+''' 1 ATP[c] '''=>''' 1 an N10-formyl-tetrahydrofolate[c] '''+''' 1 ADP[c] '''+''' 1 phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[CHC_T00009198001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00009198001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6444]], benzoate biosynthesis II (CoA-independent, non-β-oxidative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6444 PWY-6444]
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* [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''6''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-1722]], formate assimilation into 5,10-methylenetetrahydrofolate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1722 PWY-1722]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
 +
** '''8''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-2161]], folate polyglutamylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2161 PWY-2161]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[CODH-PWY]], reductive acetyl coenzyme A pathway I (homoacetogenic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=CODH-PWY CODH-PWY]
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[gap-filling]]:
+
* Category: [[orthology]]
−
** [[meneco]]:
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** Source: [[orthology-galdieria.sulphuraria]]
−
*** [[added for gapfilling]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20221 20221]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P09440 P09440]
 +
** [http://www.uniprot.org/uniprot/P13419 P13419]
 +
** [http://www.uniprot.org/uniprot/P07245 P07245]
 +
** [http://www.uniprot.org/uniprot/P11586 P11586]
 +
** [http://www.uniprot.org/uniprot/P21164 P21164]
 +
** [http://www.uniprot.org/uniprot/P28723 P28723]
 +
** [http://www.uniprot.org/uniprot/Q9JVY8 Q9JVY8]
 +
** [http://www.uniprot.org/uniprot/Q9CH07 Q9CH07]
 +
** [http://www.uniprot.org/uniprot/Q07064 Q07064]
 +
** [http://www.uniprot.org/uniprot/Q27772 Q27772]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00943 R00943]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: in pathway=PWY-6444}}
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{{#set: common name=formate--tetrahydrofolate ligase}}
−
{{#set: reconstruction category=gap-filling}}
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{{#set: ec number=EC-6.3.4.3}}
−
{{#set: reconstruction tool=meneco}}
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{{#set: gene associated=CHC_T00009198001|CHC_T00009198001_1}}
−
{{#set: reconstruction source=added for gapfilling}}
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{{#set: in pathway=PWY-2201|PWY-1722|PWY-3841|PWY-2161|CODH-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 15:13, 9 January 2019

Reaction FORMATETHFLIG-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • formate--tetrahydrofolate ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 formate[c] + 1 a tetrahydrofolate[c] + 1 ATP[c] => 1 an N10-formyl-tetrahydrofolate[c] + 1 ADP[c] + 1 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-2201, folate transformations I: PWY-2201
    • 6 reactions found over 12 reactions in the full pathway
  • PWY-1722, formate assimilation into 5,10-methylenetetrahydrofolate: PWY-1722
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-3841, folate transformations II: PWY-3841
    • 8 reactions found over 11 reactions in the full pathway
  • PWY-2161, folate polyglutamylation: PWY-2161
    • 5 reactions found over 5 reactions in the full pathway
  • CODH-PWY, reductive acetyl coenzyme A pathway I (homoacetogenic bacteria): CODH-PWY
    • 4 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=FORMATETHFLIG-RXN&oldid=19995"