Difference between revisions of "PWY-5497"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-3701 RXN-3701] == * direction: ** REVERSIBLE * common name: ** Rab geranylgeranyltransferase, b...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-3701 RXN-3701] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497] ==
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* direction:
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** REVERSIBLE
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* common name:
 
* common name:
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** Rab geranylgeranyltransferase, beta subunit
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** purine nucleobases degradation II (anaerobic)
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* ec number:
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* taxonomic range:
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** [http://enzyme.expasy.org/EC/2.5.1.60 EC-2.5.1.60]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]
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** [http://enzyme.expasy.org/EC/2.5.1.59 EC-2.5.1.59]
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* Synonym(s):
 
* Synonym(s):
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** purine fermentation
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''6''' reactions found over '''24''' reactions in the full pathway
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** 1 [[PROT-CYS]][c] '''+''' 1 [[GERANYLGERANYL-PP]][c] '''<=>''' 1 [[PPI]][c] '''+''' 1 [[S-GERANYLGERANYL-PROTEIN]][c]
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* [[GLYOHMETRANS-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 a [protein]-L-cysteine[c] '''+''' 1 geranylgeranyl diphosphate[c] '''<=>''' 1 diphosphate[c] '''+''' 1 a [protein]-S-geranylgeranyl-L-cysteine[c]
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*** [[CHC_T00009460001_1]]
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*** [[CHC_T00008323001_1]]
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== Genes associated with this reaction  ==
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** 2 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-galdieria.sulphuraria]]
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* [[CHC_T00003446001_1]]
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*** [[orthology-ectocarpus_siliculosus]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[METHENYLTHFCYCLOHYDRO-RXN]]
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* [[CHC_T00006421001_1]]
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** 2 associated gene(s):
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[CHC_T00008680001_1]]
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* [[CHC_T00009072001]]
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*** [[CHC_T00008670001_1]]
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** ORIGINAL_GENOME
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** 2 reconstruction source(s) associated:
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***AUTOMATED-NAME-MATCH
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*** [[orthology-galdieria.sulphuraria]]
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* [[CHC_T00009072001_1]]
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*** [[orthology-ectocarpus_siliculosus]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[METHYLENETHFDEHYDROG-NADP-RXN]]
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== Pathways  ==
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** 3 associated gene(s):
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== Reconstruction information  ==
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*** [[CHC_T00008670001_1]]
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* [[orthology]]:
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*** [[CHC_T00008680001_1]]
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** [[pantograph]]:
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*** [[CHC_T00008680001]]
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*** [[galdieria.sulphuraria]]
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** 3 reconstruction source(s) associated:
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* [[annotation]]:
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*** [[orthology-galdieria.sulphuraria]]
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** [[pathwaytools]]:
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*** [[annotation-original_genome]]
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*** [[original_genome]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[PYRUFLAVREDUCT-RXN]]
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** 9 associated gene(s):
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*** [[CHC_T00008442001_1]]
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*** [[CHC_T00003376001_1]]
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*** [[CHC_T00001730001_1]]
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*** [[CHC_T00001454001_1]]
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*** [[CHC_T00003402001_1]]
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*** [[CHC_T00000866001_1]]
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*** [[CHC_T00009061001_1]]
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*** [[CHC_T00008758001_1]]
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*** [[CHC_T00000865001_1]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-ectocarpus_siliculosus]]
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* [[RXN-15125]]
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** 1 associated gene(s):
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*** [[CHC_T00009480001]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-original_genome]]
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* [[RXN0-901]]
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** 3 associated gene(s):
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*** [[CHC_T00006216001_1]]
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*** [[CHC_T00006932001_1]]
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*** [[CHC_T00000194001_1]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.2-RXN 1.2.1.2-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=4.3.1.4-RXN 4.3.1.4-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=ACETATEKIN-RXN ACETATEKIN-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=FORMYLTHFDEFORMYL-RXN FORMYLTHFDEFORMYL-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE-FORMIMINOTRANSFERASE-RXN GLYCINE-FORMIMINOTRANSFERASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=GUANINE-DEAMINASE-RXN GUANINE-DEAMINASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PHOSACETYLTRANS-RXN PHOSACETYLTRANS-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R127-RXN R127-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R128-RXN R128-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R13-RXN R13-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R62-RXN R62-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R63-RXN R63-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15124 RXN-15124]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15127 RXN-15127]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8751 RXN-8751]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8752 RXN-8752]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8753 RXN-8753]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8754 RXN-8754]
 
== External links  ==
 
== External links  ==
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=purine nucleobases degradation II (anaerobic)}}
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{{#set: common name=Rab geranylgeranyltransferase, beta subunit}}
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{{#set: taxonomic range=TAX-1239}}
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{{#set: ec number=EC-2.5.1.60}}
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{{#set: common name=purine fermentation}}
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{{#set: ec number=EC-2.5.1.59}}
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{{#set: reaction found=6}}
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{{#set: gene associated=CHC_T00003446001_1|CHC_T00006421001_1|CHC_T00009072001|CHC_T00009072001_1}}
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{{#set: total reaction=24}}
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{{#set: in pathway=}}
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{{#set: completion rate=25.0}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=original_genome}}
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Latest revision as of 15:18, 9 January 2019

Pathway PWY-5497

  • common name:
    • purine nucleobases degradation II (anaerobic)
  • taxonomic range:
  • Synonym(s):
    • purine fermentation

Reaction(s) found

6 reactions found over 24 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PWY-5497&oldid=20119"