Difference between revisions of "RXN-1404"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=BENZOATE BENZOATE] == * smiles: ** C(C1(C=CC=CC=1))([O-])=O * common name: ** benzoate * inchi...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=BENZOATE BENZOATE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1404 RXN-1404] ==
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* smiles:
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* direction:
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** C(C1(C=CC=CC=1))([O-])=O
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** benzoate
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** nitrilase
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* inchi key:
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* ec number:
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** InChIKey=WPYMKLBDIGXBTP-UHFFFAOYSA-M
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** [http://enzyme.expasy.org/EC/3.5.5.1 EC-3.5.5.1]
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* molecular weight:
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** 121.115   
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* Synonym(s):
 
* Synonym(s):
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** benzoic acid
 
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** benzenecarboxylic acid
 
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** phenylformic acid
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[RXN-9336]]
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** 1 [[INDOLEYL-CPD]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[INDOLE_ACETATE_AUXIN]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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* [[BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN]]
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** 1 indole-3-acetonitrile[c] '''+''' 2 H2O[c] '''=>''' 1 ammonium[c] '''+''' 1 indole-3-acetate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[CHC_T00008379001]]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00008379001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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== Pathways  ==
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* [[PWYQT-4476]], indole glucosinolate activation (herbivore attack): [http://metacyc.org/META/NEW-IMAGE?object=PWYQT-4476 PWYQT-4476]
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** '''1''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-5026]], indole-3-acetate biosynthesis V (bacteria and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5026 PWY-5026]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWY-581]], indole-3-acetate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-581 PWY-581]
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** '''2''' reactions found over '''13''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-original_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 65-85-0
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* LIGAND-RXN:
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* PUBCHEM:
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** [http://www.genome.jp/dbget-bin/www_bget?R03093 R03093]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=242 242]
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{{#set: direction=LEFT-TO-RIGHT}}
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* HMDB : HMDB01870
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{{#set: common name=nitrilase}}
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* LIGAND-CPD:
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{{#set: ec number=EC-3.5.5.1}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00180 C00180]
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{{#set: gene associated=CHC_T00008379001|CHC_T00008379001_1}}
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* CHEMSPIDER:
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{{#set: in pathway=PWYQT-4476|PWY-5026|PWY-581}}
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** [http://www.chemspider.com/Chemical-Structure.237.html 237]
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{{#set: reconstruction category=orthology|annotation}}
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* CHEBI:
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=16150 16150]
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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* METABOLIGHTS : MTBLC16150
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{{#set: smiles=C(C1(C=CC=CC=1))([O-])=O}}
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{{#set: common name=benzoate}}
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{{#set: inchi key=InChIKey=WPYMKLBDIGXBTP-UHFFFAOYSA-M}}
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{{#set: molecular weight=121.115    }}
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{{#set: common name=benzoic acid|benzenecarboxylic acid|phenylformic acid}}
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{{#set: produced by=RXN-9336}}
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{{#set: consumed or produced by=BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN}}
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Latest revision as of 15:26, 9 January 2019

Reaction RXN-1404

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • nitrilase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWYQT-4476, indole glucosinolate activation (herbivore attack): PWYQT-4476
    • 1 reactions found over 13 reactions in the full pathway
  • PWY-5026, indole-3-acetate biosynthesis V (bacteria and fungi): PWY-5026
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-581, indole-3-acetate biosynthesis II: PWY-581
    • 2 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-1404&oldid=20291"