Difference between revisions of "CHC T00008988001"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13202 RXN-13202] == * direction: ** LEFT-TO-RIGHT * common name: ** carbamoyl phosphate synthas...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13202 RXN-13202] ==
+
== Gene CHC_T00008988001 ==
−
* direction:
+
* left end position:
−
** LEFT-TO-RIGHT
+
** 30202
−
* common name:
+
* transcription direction:
−
** carbamoyl phosphate synthase small subunit
+
** NEGATIVE
−
* ec number:
+
* right end position:
−
** [http://enzyme.expasy.org/EC/6.3.4.16 EC-6.3.4.16]
+
** 32811
 +
* centisome position:
 +
** 29.744238   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[GLYCOPHOSPHORYL-RXN]]
−
** 1 [[HCO3]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 2 [[ATP]][c] '''=>''' 1 [[CARBAMOYL-P]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 2 [[ADP]][c]
+
** Source: [[annotation-original_genome]]
−
* With common name(s):
+
*** Assignment: automated-name-match
−
** 1 hydrogencarbonate[c] '''+''' 1 ammonium[c] '''+''' 2 ATP[c] '''=>''' 1 carbamoyl phosphate[c] '''+''' 2 H+[c] '''+''' 1 phosphate[c] '''+''' 2 ADP[c]
+
* Reaction: [[GLYMALTOPHOSPHORYL-RXN]]
−
 
+
** Source: [[annotation-original_genome]]
−
== Genes associated with this reaction  ==
+
*** Assignment: automated-name-match
−
Genes have been associated with this reaction based on different elements listed below.
+
* Reaction: [[RXN-12171]]
−
* [[CHC_70]]
+
** Source: [[annotation-original_genome]]
−
** ORIGINAL_GENOME
+
*** Assignment: automated-name-match
−
***AUTOMATED-NAME-MATCH
+
* Reaction: [[RXN-12392]]
−
* [[CHC_T00010056001_1]]
+
** Source: [[annotation-original_genome]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
*** Assignment: automated-name-match
−
* [[CHC_T00008596001_1]]
+
* Reaction: [[RXN-14284]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[annotation-original_genome]]
−
== Pathways  ==
+
*** Assignment: automated-name-match
−
* [[PWY-4984]], urea cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984]
+
* Reaction: [[RXN-14285]]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** Source: [[annotation-original_genome]]
−
== Reconstruction information  ==
+
*** Assignment: automated-name-match
−
* [[orthology]]:
+
* Reaction: [[RXN-14286]]
−
** [[pantograph]]:
+
** Source: [[annotation-original_genome]]
−
*** [[galdieria.sulphuraria]]
+
*** Assignment: automated-name-match
−
* [[annotation]]:
+
* Reaction: [[RXN-14353]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-original_genome]]
−
*** [[original_genome]]
+
*** Assignment: automated-name-match
 +
* Reaction: [[RXN-1826]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: automated-name-match
 +
* Reaction: [[RXN-9025]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: automated-name-match
 +
* Reaction: [[RXN0-5182]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: automated-name-match
 +
* Reaction: [[RXN0-5184]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: automated-name-match
 +
== Pathways associated ==
 +
* [[PWY-7238]]
 +
* [[PWY-5941]]
 +
* [[PWY-6737]]
 +
* [[PWY-6731]]
 +
* [[GLYCOCAT-PWY]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: left end position=30202}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10624 10624]
+
{{#set: transcription direction=NEGATIVE}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18030 18030]
+
{{#set: right end position=32811}}
−
* LIGAND-RXN:
+
{{#set: centisome position=29.744238    }}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00149 R00149]
+
{{#set: reaction associated=GLYCOPHOSPHORYL-RXN|GLYMALTOPHOSPHORYL-RXN|RXN-12171|RXN-12392|RXN-14284|RXN-14285|RXN-14286|RXN-14353|RXN-1826|RXN-9025|RXN0-5182|RXN0-5184}}
−
* UNIPROT:
+
{{#set: pathway associated=PWY-7238|PWY-5941|PWY-6737|PWY-6731|GLYCOCAT-PWY}}
−
** [http://www.uniprot.org/uniprot/O15829 O15829]
+
−
** [http://www.uniprot.org/uniprot/O15830 O15830]
+
−
** [http://www.uniprot.org/uniprot/P07756 P07756]
+
−
** [http://www.uniprot.org/uniprot/P31327 P31327]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=carbamoyl phosphate synthase small subunit}}
+
−
{{#set: ec number=EC-6.3.4.16}}
+
−
{{#set: gene associated=CHC_70|CHC_T00010056001_1|CHC_T00008596001_1}}
+
−
{{#set: in pathway=PWY-4984}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=galdieria.sulphuraria}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=original_genome}}
+

Latest revision as of 15:33, 9 January 2019

Gene CHC_T00008988001

  • left end position:
    • 30202
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 32811
  • centisome position:
    • 29.744238
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=CHC_T00008988001&oldid=20449"