Difference between revisions of "R223-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-47...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=R223-RXN R223-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** formaldehyde assimilation III (dihydroxyacetone cycle)
+
** octanoyl-CoA ligase
 +
** long-chain-fatty-acid-CoA ligase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
−
** dihydroxyacetone cycle
 
−
** xylulose-monophosphate cycle
 
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
* '''10''' reaction(s) found
+
* With identifiers:
−
** [[F16BDEPHOS-RXN]]
+
** 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD-195]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[CPD-196]][c]
−
** [[1TRANSKETO-RXN]]
+
* With common name(s):
−
** [[TRANSALDOL-RXN]]
+
** 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 octanoate[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 octanoyl-CoA[c]
−
** [[TRIOSEPISOMERIZATION-RXN]]
+
 
−
** [[RIBULP3EPIM-RXN]]
+
== Genes associated with this reaction  ==
−
** [[PHOSGLYPHOS-RXN]]
+
Genes have been associated with this reaction based on different elements listed below.
−
** [[RIB5PISOM-RXN]]
+
* Gene: [[CHC_T00008160001_1]]
−
** [[2TRANSKETO-RXN]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
** [[GAPOXNPHOSPHN-RXN]]
+
* Gene: [[CHC_T00008811001]]
−
** [[F16ALDOLASE-RXN]]
+
** Source: [[annotation-original_genome]]
−
== Reaction(s) not found ==
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* '''2''' reaction(s) not found
+
* Gene: [[CHC_T00009428001_1]]
−
** [http://metacyc.org/META/NEW-IMAGE?object=GLYCERONE-KINASE-RXN GLYCERONE-KINASE-RXN]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
** [http://metacyc.org/META/NEW-IMAGE?object=FORMALDEHYDE-TRANSKETOLASE-RXN FORMALDEHYDE-TRANSKETOLASE-RXN]
+
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00009428001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00008500001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00008811001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
== Pathways  ==
 +
* [[P221-PWY]], octane oxidation: [http://metacyc.org/META/NEW-IMAGE?object=P221-PWY P221-PWY]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6920]], 6-gingerol analog biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6920 PWY-6920]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-4751}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=formaldehyde assimilation III (dihydroxyacetone cycle)}}
+
{{#set: common name=octanoyl-CoA ligase}}
−
{{#set: common name=dihydroxyacetone cycle|xylulose-monophosphate cycle}}
+
{{#set: common name=long-chain-fatty-acid-CoA ligase}}
−
{{#set: reaction found=10}}
+
{{#set: ec number=EC-6.2.1.3}}
−
{{#set: reaction not found=2}}
+
{{#set: gene associated=CHC_T00008160001_1|CHC_T00008811001|CHC_T00009428001_1|CHC_T00009428001|CHC_T00008500001_1|CHC_T00008811001_1}}
 +
{{#set: in pathway=P221-PWY|PWY-6920}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 16:44, 9 January 2019

Reaction R223-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • octanoyl-CoA ligase
    • long-chain-fatty-acid-CoA ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 coenzyme A[c] + 1 octanoate[c] => 1 AMP[c] + 1 diphosphate[c] + 1 octanoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • P221-PWY, octane oxidation: P221-PWY
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6920, 6-gingerol analog biosynthesis (engineered): PWY-6920
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=R223-RXN&oldid=20754"