Difference between revisions of "RXN0-1461"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTCYCLOHYD-RXN HISTCYCLOHYD-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme....")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTCYCLOHYD-RXN HISTCYCLOHYD-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.5.4.19 EC-3.5.4.19]
+
** [http://enzyme.expasy.org/EC/1.3.3.3 EC-1.3.3.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PHOSPHORIBOSYL-AMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PHOSPHORIBOSYL-FORMIMINO-AICAR-P]][c]
+
** 2 [[PROTON]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 2 [[WATER]][c] '''+''' 2 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 1-(5-phospho-β-D-ribosyl)-AMP[c] '''+''' 1 H2O[c] '''=>''' 1 1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide[c]
+
** 2 H+[c] '''+''' 1 coproporphyrinogen III[c] '''+''' 1 oxygen[c] '''=>''' 1 protoporphyrinogen IX[c] '''+''' 2 H2O[c] '''+''' 2 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00008128001_1]]
+
* Gene: [[CHC_T00003096001_1]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
** [[pantograph]]-[[a.taliana]]
+
* Gene: [[CHC_T00002160001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00008857001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
** Source: [[orthology-arabidopsis_thaliana]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[HISTSYN-PWY]], L-histidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=HISTSYN-PWY HISTSYN-PWY]
+
* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-galdieria.sulphuraria]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
−
*** [[a.taliana]]
+
** Source: [[orthology-arabidopsis_thaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20049 20049]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18257 18257]
−
* LIGAND-RXN:
+
−
** [http://www.genome.jp/dbget-bin/www_bget?R04037 R04037]
+
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P44434 P44434]
+
** [http://www.uniprot.org/uniprot/Q9RLE1 Q9RLE1]
−
** [http://www.uniprot.org/uniprot/Q9JVH6 Q9JVH6]
+
** [http://www.uniprot.org/uniprot/P36552 P36552]
−
** [http://www.uniprot.org/uniprot/Q9X0C5 Q9X0C5]
+
** [http://www.uniprot.org/uniprot/O25376 O25376]
−
** [http://www.uniprot.org/uniprot/Q9PM71 Q9PM71]
+
** [http://www.uniprot.org/uniprot/P36553 P36553]
−
** [http://www.uniprot.org/uniprot/Q02130 Q02130]
+
** [http://www.uniprot.org/uniprot/P33771 P33771]
−
** [http://www.uniprot.org/uniprot/Q9RWD6 Q9RWD6]
+
** [http://www.uniprot.org/uniprot/P43899 P43899]
−
** [http://www.uniprot.org/uniprot/Q58825 Q58825]
+
** [http://www.uniprot.org/uniprot/O25824 O25824]
−
** [http://www.uniprot.org/uniprot/O28329 O28329]
+
** [http://www.uniprot.org/uniprot/P54304 P54304]
−
** [http://www.uniprot.org/uniprot/O34912 O34912]
+
** [http://www.uniprot.org/uniprot/P11353 P11353]
−
** [http://www.uniprot.org/uniprot/P0A5B3 P0A5B3]
+
** [http://www.uniprot.org/uniprot/Q8X8G8 Q8X8G8]
−
** [http://www.uniprot.org/uniprot/Q9HUB7 Q9HUB7]
+
** [http://www.uniprot.org/uniprot/Q9ZC86 Q9ZC86]
−
** [http://www.uniprot.org/uniprot/Q9KSW7 Q9KSW7]
+
** [http://www.uniprot.org/uniprot/P36551 P36551]
−
** [http://www.uniprot.org/uniprot/Q9K0H5 Q9K0H5]
+
** [http://www.uniprot.org/uniprot/P35055 P35055]
−
** [http://www.uniprot.org/uniprot/O67780 O67780]
+
** [http://www.uniprot.org/uniprot/P43898 P43898]
−
** [http://www.uniprot.org/uniprot/Q9PBD1 Q9PBD1]
+
** [http://www.uniprot.org/uniprot/P72848 P72848]
−
** [http://www.uniprot.org/uniprot/Q50837 Q50837]
+
** [http://www.uniprot.org/uniprot/P73245 P73245]
−
** [http://www.uniprot.org/uniprot/Q53158 Q53158]
+
** [http://www.uniprot.org/uniprot/P74132 P74132]
−
** [http://www.uniprot.org/uniprot/P45353 P45353]
+
** [http://www.uniprot.org/uniprot/Q51676 Q51676]
−
** [http://www.uniprot.org/uniprot/Q12670 Q12670]
+
** [http://www.uniprot.org/uniprot/Q42946 Q42946]
−
** [http://www.uniprot.org/uniprot/P00815 P00815]
+
** [http://www.uniprot.org/uniprot/Q42840 Q42840]
−
** [http://www.uniprot.org/uniprot/P07685 P07685]
+
** [http://www.uniprot.org/uniprot/Q39581 Q39581]
−
** [http://www.uniprot.org/uniprot/O59667 O59667]
+
** [http://www.uniprot.org/uniprot/P95651 P95651]
−
** [http://www.uniprot.org/uniprot/Q9X7C3 Q9X7C3]
+
** [http://www.uniprot.org/uniprot/Q9RFG1 Q9RFG1]
−
** [http://www.uniprot.org/uniprot/O82768 O82768]
+
* LIGAND-RXN:
−
** [http://www.uniprot.org/uniprot/P10367 P10367]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03220 R03220]
−
** [http://www.uniprot.org/uniprot/P06989 P06989]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-3.5.4.19}}
+
{{#set: ec number=EC-1.3.3.3}}
−
{{#set: gene associated=CHC_T00008128001_1}}
+
{{#set: gene associated=CHC_T00003096001_1|CHC_T00002160001_1|CHC_T00008857001_1}}
−
{{#set: in pathway=HISTSYN-PWY}}
+
{{#set: in pathway=PWY0-1415|CHLOROPHYLL-SYN|HEME-BIOSYNTHESIS-II|PWY-7159}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-galdieria.sulphuraria|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}
 

Latest revision as of 16:46, 9 January 2019

Reaction RXN0-1461

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1415, superpathway of heme biosynthesis from uroporphyrinogen-III: PWY0-1415
    • 5 reactions found over 6 reactions in the full pathway
  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): CHLOROPHYLL-SYN
    • 9 reactions found over 9 reactions in the full pathway
  • HEME-BIOSYNTHESIS-II, heme biosynthesis I (aerobic): HEME-BIOSYNTHESIS-II
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): PWY-7159
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN0-1461&oldid=20790"