Difference between revisions of "CHC T00008696001"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIB5PISOM-RXN RIB5PISOM-RXN] == * direction: ** REVERSIBLE * common name: ** Ribose-5-phosphate iso...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIB5PISOM-RXN RIB5PISOM-RXN] ==
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== Gene CHC_T00008696001 ==
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* direction:
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* left end position:
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** REVERSIBLE
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** 4757
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* common name:
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* transcription direction:
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** Ribose-5-phosphate isomerase
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** NEGATIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/5.3.1.6 EC-5.3.1.6]
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** 6603
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* centisome position:
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** 2.3427496   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[2PGADEHYDRAT-RXN]]
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** 1 [[RIBOSE-5P]][c] '''<=>''' 1 [[RIBULOSE-5P]][c]
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** Source: [[annotation-original_genome]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 D-ribose 5-phosphate[c] '''<=>''' 1 D-ribulose 5-phosphate[c]
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== Pathways associated ==
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* [[PWY-6886]]
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== Genes associated with this reaction  ==
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* [[GLYCOLYSIS]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[P124-PWY]]
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* [[CHC_T00009264001_1]]
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* [[PWY-6142]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[PWY-5484]]
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** [[pantograph]]-[[a.taliana]]
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* [[P122-PWY]]
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** [[pantograph]]-[[a.taliana]]
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* [[NPGLUCAT-PWY]]
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== Pathways  ==
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* [[PWY-1042]]
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* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
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* [[PWY-7124]]
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** '''11''' reactions found over '''15''' reactions in the full pathway
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* [[PWY-7003]]
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* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
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* [[PWY-5723]]
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** '''13''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-6901]]
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* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
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* [[PWY-7218]]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-2221]]
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* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
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* [[ANAGLYCOLYSIS-PWY]]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[PWY66-399]]
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* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
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* [[GLUCONEO-PWY]]
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** '''10''' reactions found over '''12''' reactions in the full pathway
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* [[P341-PWY]]
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* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
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* [[PWY-1622]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[galdieria.sulphuraria]]
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*** [[a.taliana]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[original_genome]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=4757}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14657 14657]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=6603}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01056 R01056]
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{{#set: centisome position=2.3427496    }}
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* UNIPROT:
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{{#set: reaction associated=2PGADEHYDRAT-RXN}}
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** [http://www.uniprot.org/uniprot/P0A7Z0 P0A7Z0]
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{{#set: pathway associated=PWY-6886|GLYCOLYSIS|P124-PWY|PWY-6142|PWY-5484|P122-PWY|NPGLUCAT-PWY|PWY-1042|PWY-7124|PWY-7003|PWY-5723|PWY-6901|PWY-7218|PWY-2221|ANAGLYCOLYSIS-PWY|PWY66-399|GLUCONEO-PWY|P341-PWY|PWY-1622}}
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** [http://www.uniprot.org/uniprot/Q9CDI7 Q9CDI7]
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** [http://www.uniprot.org/uniprot/P44725 P44725]
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** [http://www.uniprot.org/uniprot/Q58998 Q58998]
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** [http://www.uniprot.org/uniprot/Q9JTM5 Q9JTM5]
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** [http://www.uniprot.org/uniprot/Q9PP08 Q9PP08]
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** [http://www.uniprot.org/uniprot/P37351 P37351]
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** [http://www.uniprot.org/uniprot/P74234 P74234]
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** [http://www.uniprot.org/uniprot/Q55766 Q55766]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=Ribose-5-phosphate isomerase}}
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{{#set: ec number=EC-5.3.1.6}}
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{{#set: gene associated=CHC_T00009264001_1}}
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{{#set: in pathway=P124-PWY|CALVIN-PWY|PWY-5723|PWY-1861|P185-PWY|NONOXIPENT-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=original_genome}}
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Latest revision as of 15:56, 9 January 2019

Gene CHC_T00008696001

  • left end position:
    • 4757
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 6603
  • centisome position:
    • 2.3427496
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=CHC_T00008696001&oldid=21023"