Difference between revisions of "RXN0-302"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-6601 RXN-6601] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-302 RXN0-302] == |
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| + | * common name: | ||
| + | ** 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | ||
* ec number: | * ec number: | ||
| − | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/4.6.1.12 EC-4.6.1.12] |
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET]][c] '''=>''' 1 [[2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE]][c] '''+''' 1 [[CMP]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 | + | ** 1 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] '''=>''' 1 2-C-methyl-D-erythritol-2,4-cyclodiphosphate[c] '''+''' 1 CMP[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * [[ | + | * Gene: [[CHC_T00009483001_1]] |
| − | ** [[ | + | ** Source: [[orthology-galdieria.sulphuraria]] |
| − | * [[ | + | ** Source: [[orthology-ectocarpus_siliculosus]] |
| − | * | + | * Gene: [[CHC_T00009483001]] |
| + | ** Source: [[annotation-original_genome]] | ||
| + | *** Assignment: AUTOMATED-NAME-MATCH | ||
== Pathways == | == Pathways == | ||
| − | * [[PWY- | + | * [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560] |
| − | ** ''' | + | ** '''8''' reactions found over '''9''' reactions in the full pathway |
| + | * [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY] | ||
| + | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| − | * [[orthology]]: | + | * Category: [[orthology]] |
| − | ** [[pantograph]]: | + | ** Source: [[orthology-galdieria.sulphuraria]] |
| − | *** [[ | + | *** Tool: [[pantograph]] |
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | * Category: [[annotation]] | ||
| + | ** Source: [[annotation-original_genome]] | ||
| + | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23864 23864] | ||
| + | * LIGAND-RXN: | ||
| + | ** [http://www.genome.jp/dbget-bin/www_bget?R05637 R05637] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | {{#set: ec number=EC- | + | {{#set: common name=2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase}} |
| − | {{#set: gene associated= | + | {{#set: ec number=EC-4.6.1.12}} |
| − | {{#set: in pathway=PWY- | + | {{#set: gene associated=CHC_T00009483001_1|CHC_T00009483001}} |
| − | {{#set: reconstruction category=orthology}} | + | {{#set: in pathway=PWY-7560|NONMEVIPP-PWY}} |
| − | {{#set: reconstruction | + | {{#set: reconstruction category=orthology|annotation}} |
| − | {{#set: reconstruction | + | {{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}} |
| + | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 17:04, 9 January 2019
Contents
Reaction RXN0-302
- direction:
- LEFT-TO-RIGHT
- common name:
- 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET[c] => 1 2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE[c] + 1 CMP[c]
- With common name(s):
- 1 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] => 1 2-C-methyl-D-erythritol-2,4-cyclodiphosphate[c] + 1 CMP[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: CHC_T00009483001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_T00009483001
- Source: annotation-original_genome
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-original_genome
Pathways
- PWY-7560, methylerythritol phosphate pathway II: PWY-7560
- 8 reactions found over 9 reactions in the full pathway
- NONMEVIPP-PWY, methylerythritol phosphate pathway I: NONMEVIPP-PWY
- 7 reactions found over 9 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-galdieria.sulphuraria
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-galdieria.sulphuraria
- Category: annotation
- Source: annotation-original_genome
- Tool: pathwaytools
- Source: annotation-original_genome
External links
