Difference between revisions of "PWY-1121"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=H2PTERIDINEPYROPHOSPHOKIN-RXN H2PTERIDINEPYROPHOSPHOKIN-RXN] == * direction: ** LEFT-TO-RIGHT * ec...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=H2PTERIDINEPYROPHOSPHOKIN-RXN H2PTERIDINEPYROPHOSPHOKIN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121] ==
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* direction:
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* common name:
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** LEFT-TO-RIGHT
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** suberin monomers biosynthesis
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* ec number:
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* taxonomic range:
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** [http://enzyme.expasy.org/EC/2.7.6.3 EC-2.7.6.3]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58023 TAX-58023]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''8''' reactions found over '''19''' reactions in the full pathway
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** 1 [[AMINO-OH-HYDROXYMETHYL-DIHYDROPTERIDINE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[DIHYDROPTERIN-CH2OH-PP]][c]
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* [[6.2.1.34-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 6-(hydroxymethyl)-7,8-dihydropterin[c] '''+''' 1 ATP[c] '''=>''' 1 H+[c] '''+''' 1 AMP[c] '''+''' 1 (7,8-dihydropterin-6-yl)methyl diphosphate[c]
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*** [[CHC_T00008472001_1]]
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*** [[CHC_T00008160001_1]]
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== Genes associated with this reaction  ==
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** 2 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-arabidopsis_thaliana]]
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* [[CHC_T00007059001_1]]
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*** [[orthology-ectocarpus_siliculosus]]
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** [[pantograph]]-[[a.taliana]]
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* [[CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN]]
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== Pathways  ==
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** 8 associated gene(s):
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* [[PWY-7539]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7539 PWY-7539]
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*** [[CHC_T00001053001_1]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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*** [[CHC_T00007618001_1]]
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* [[PWY-6797]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6797 PWY-6797]
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*** [[CHC_T00001829001_1]]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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*** [[CHC_T00004504001_1]]
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* [[PWY-6147]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6147 PWY-6147]
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*** [[CHC_T00003825001_1]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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*** [[CHC_T00001696001_1]]
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== Reconstruction information  ==
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*** [[CHC_T00009338001_1]]
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* [[orthology]]:
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*** [[CHC_T00005475001_1]]
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** [[pantograph]]:
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** 2 reconstruction source(s) associated:
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*** [[a.taliana]]
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[PHENYLALANINE-AMMONIA-LYASE-RXN]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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* [[RXN-1126]]
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** 2 associated gene(s):
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*** [[CHC_T00008160001_1]]
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*** [[CHC_T00008472001_1]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[RXN-16389]]
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** 6 associated gene(s):
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*** [[CHC_T00008500001_1]]
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*** [[CHC_T00009428001]]
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*** [[CHC_T00008811001_1]]
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*** [[CHC_T00009428001_1]]
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*** [[CHC_T00008160001_1]]
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*** [[CHC_T00008811001]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[RXN-16418]]
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** 6 associated gene(s):
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*** [[CHC_T00009428001]]
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*** [[CHC_T00008811001]]
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*** [[CHC_T00008500001_1]]
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*** [[CHC_T00008811001_1]]
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*** [[CHC_T00008160001_1]]
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*** [[CHC_T00009428001_1]]
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** 3 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[RXN-9666]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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* [[TRANS-CINNAMATE-4-MONOOXYGENASE-RXN]]
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** 9 associated gene(s):
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*** [[CHC_T00009062001_1]]
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*** [[CHC_T00008616001_1]]
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*** [[CHC_T00008663001_1]]
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*** [[CHC_T00009131001_1]]
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*** [[CHC_T00010245001_1]]
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*** [[CHC_T00008672001_1]]
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*** [[CHC_T00009499001_1]]
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*** [[CHC_T00008813001_1]]
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*** [[CHC_T00010004001_1]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-arabidopsis_thaliana]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=PALMITOYL-COA-HYDROLASE-RXN PALMITOYL-COA-HYDROLASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1103 RXN-1103]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1104 RXN-1104]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12155 RXN-12155]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12156 RXN-12156]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12157 RXN-12157]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16398 RXN-16398]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16400 RXN-16400]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16416 RXN-16416]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16417 RXN-16417]
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* [http://metacyc.org/META/NEW-IMAGE?object=TYRAMINE-N-FERULOYLTRANSFERASE-RXN TYRAMINE-N-FERULOYLTRANSFERASE-RXN]
 
== External links  ==
 
== External links  ==
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* RHEA:
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* ARACYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11412 11412]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-1121 PWY-1121]
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* LIGAND-RXN:
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{{#set: common name=suberin monomers biosynthesis}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03503 R03503]
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{{#set: taxonomic range=TAX-58023}}
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* UNIPROT:
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{{#set: reaction found=8}}
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** [http://www.uniprot.org/uniprot/P22291 P22291]
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{{#set: total reaction=19}}
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** [http://www.uniprot.org/uniprot/P26281 P26281]
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{{#set: completion rate=42.0}}
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** [http://www.uniprot.org/uniprot/O84619 O84619]
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** [http://www.uniprot.org/uniprot/Q9ZM35 Q9ZM35]
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** [http://www.uniprot.org/uniprot/Q9RXY4 Q9RXY4]
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** [http://www.uniprot.org/uniprot/O66550 O66550]
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** [http://www.uniprot.org/uniprot/O25680 O25680]
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** [http://www.uniprot.org/uniprot/Q9PJ54 Q9PJ54]
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** [http://www.uniprot.org/uniprot/Q9JV81 Q9JV81]
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** [http://www.uniprot.org/uniprot/P64143 P64143]
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** [http://www.uniprot.org/uniprot/Q9Z7E8 Q9Z7E8]
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** [http://www.uniprot.org/uniprot/P82602 P82602]
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** [http://www.uniprot.org/uniprot/P29252 P29252]
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** [http://www.uniprot.org/uniprot/P72736 P72736]
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** [http://www.uniprot.org/uniprot/O04862 O04862]
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** [http://www.uniprot.org/uniprot/Q9SZV3 Q9SZV3]
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** [http://www.uniprot.org/uniprot/Q9X8I1 Q9X8I1]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-2.7.6.3}}
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{{#set: gene associated=CHC_T00007059001_1}}
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{{#set: in pathway=PWY-7539|PWY-6797|PWY-6147}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=a.taliana}}
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Latest revision as of 16:00, 9 January 2019

Pathway PWY-1121

  • common name:
    • suberin monomers biosynthesis
  • taxonomic range:
  • Synonym(s):

Reaction(s) found

8 reactions found over 19 reactions in the full pathway

Reaction(s) not found

External links



Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PWY-1121&oldid=21116"