Difference between revisions of "RXN-13614"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5468 RXN0-5468] == * direction: ** LEFT-TO-RIGHT * common name: ** peroxiredoxin, PRX3 ** pero...")
 
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5468 RXN0-5468] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13614 RXN-13614] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** peroxiredoxin, PRX3
+
** long-chain-fatty-acid-CoA ligase
−
** peroxiredoxin, PRX1
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.11.1.15 EC-1.11.1.15]
+
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Red-Thioredoxin]][c] '''+''' 1 [[Alkyl-Hydro-Peroxides]][c] '''=>''' 1 [[Alcohols]][c] '''+''' 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[WATER]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD-3617]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[CPD-10267]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a reduced thioredoxin[c] '''+''' 1 an organic hydroperoxide[c] '''=>''' 1 an alcohol[c] '''+''' 1 an oxidized thioredoxin[c] '''+''' 1 H2O[c]
+
** 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 decanoate[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 decanoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00009369001]]
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* Gene: [[CHC_T00009428001_1]]
−
** ORIGINAL_GENOME
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** Source: [[orthology-galdieria.sulphuraria]]
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***AUTOMATED-NAME-MATCH
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** Source: [[orthology-ectocarpus_siliculosus]]
−
* [[CHC_T00002035001_1]]
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* Gene: [[CHC_T00009428001]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[annotation-original_genome]]
−
* [[CHC_T00003196001_1]]
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*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
* Gene: [[CHC_T00008811001]]
−
* [[CHC_T00010097001]]
+
** Source: [[annotation-original_genome]]
−
** ORIGINAL_GENOME
+
*** Assignment: AUTOMATED-NAME-MATCH
−
***AUTOMATED-NAME-MATCH
+
* Gene: [[CHC_T00008160001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00008811001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00008500001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7094]], fatty acid salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7094 PWY-7094]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-galdieria.sulphuraria]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[original_genome]]
+
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=peroxiredoxin, PRX3}}
+
{{#set: common name=long-chain-fatty-acid-CoA ligase}}
−
{{#set: common name=peroxiredoxin, PRX1}}
+
{{#set: ec number=EC-6.2.1.3}}
−
{{#set: ec number=EC-1.11.1.15}}
+
{{#set: gene associated=CHC_T00009428001_1|CHC_T00009428001|CHC_T00008811001|CHC_T00008160001_1|CHC_T00008811001_1|CHC_T00008500001_1}}
−
{{#set: gene associated=CHC_T00009369001|CHC_T00002035001_1|CHC_T00003196001_1|CHC_T00010097001}}
+
{{#set: in pathway=PWY-7094}}
−
{{#set: in pathway=}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction source=galdieria.sulphuraria}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=original_genome}}
+

Latest revision as of 16:17, 9 January 2019

Reaction RXN-13614

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • long-chain-fatty-acid-CoA ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 coenzyme A[c] + 1 decanoate[c] => 1 AMP[c] + 1 diphosphate[c] + 1 decanoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7094, fatty acid salvage: PWY-7094
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-13614&oldid=20084"