Difference between revisions of "RXN-12567"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7456 PWY-7456] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7456 PWY-7456] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12567 RXN-12567] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** LEFT-TO-RIGHT
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* common name:
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* ec number:
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** β-(1,4)-mannan degradation
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** [http://enzyme.expasy.org/EC/4.2.1.17 EC-4.2.1.17]
 
* Synonym(s):
 
* Synonym(s):
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** plant mannan degradation
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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* '''2''' reaction(s) found
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* With identifiers:
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** [[MANNPISOM-RXN]]
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** 1 [[OH-HEXANOYL-COA]][c] '''=>''' 1 [[CPD0-2121]][c] '''+''' 1 [[WATER]][c]
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** [[PHOSMANMUT-RXN]]
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* With common name(s):
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== Reaction(s) not found ==
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** 1 (S)-3-hydroxyhexanoyl-CoA[c] '''=>''' 1 trans-hex-2-enoyl-CoA[c] '''+''' 1 H2O[c]
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* '''5''' reaction(s) not found
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-15202 RXN-15202]
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== Genes associated with this reaction ==
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** [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.78-RXN 3.2.1.78-RXN]
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Genes have been associated with this reaction based on different elements listed below.
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-15344 RXN-15344]
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* Gene: [[CHC_T00009349001_1]]
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** [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.100-RXN 3.2.1.100-RXN]
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** Source: [[orthology-galdieria.sulphuraria]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-12977 RXN-12977]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00009422001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* Gene: [[CHC_T00009190001_1]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00009110001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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== Pathways  ==
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* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2}}
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* RHEA:
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{{#set: common name=β-(1,4)-mannan degradation}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30549 30549]
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{{#set: common name=plant mannan degradation}}
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* LIGAND-RXN:
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{{#set: reaction found=2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04749 R04749]
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{{#set: reaction not found=5}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-4.2.1.17}}
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{{#set: gene associated=CHC_T00009349001_1|CHC_T00009422001_1|CHC_T00009190001_1|CHC_T00009110001_1}}
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{{#set: in pathway=PWY-6863}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|orthology-ectocarpus_siliculosus}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:18, 9 January 2019

Reaction RXN-12567

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (S)-3-hydroxyhexanoyl-CoA[c] => 1 trans-hex-2-enoyl-CoA[c] + 1 H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6863, pyruvate fermentation to hexanol (engineered): PWY-6863
    • 10 reactions found over 11 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-12567&oldid=20102"