Difference between revisions of "CHC T00009531001"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] == * direction: ** LEFT-TO-RIGHT * common name: ** serine--tRNA ligase, cytopl...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] ==
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== Gene CHC_T00009531001 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 171786
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* common name:
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* transcription direction:
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** serine--tRNA ligase, cytoplasmic
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** NEGATIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/6.1.1.11 EC-6.1.1.11]
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** 173804
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* centisome position:
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** 26.294554   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ACYL-COA-OXIDASE-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[tRNA-Sec]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[L-seryl-SEC-tRNAs]][c] '''+''' 1 [[AMP]][c]
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** Source: [[annotation-original_genome]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 ATP[c] '''+''' 1 a tRNAsec[c] '''+''' 1 L-serine[c] '''=>''' 1 diphosphate[c] '''+''' 1 an L-seryl-[tRNAsec][c] '''+''' 1 AMP[c]
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* Reaction: [[RXN-10696]]
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** Source: [[annotation-original_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-10706]]
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* [[CHC_T00009366001_1]]
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** Source: [[annotation-original_genome]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** Assignment: automated-name-match
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* [[CHC_T00009407001]]
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* Reaction: [[RXN-10707]]
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** ORIGINAL_GENOME
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** Source: [[annotation-original_genome]]
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***AUTOMATED-NAME-MATCH
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*** Assignment: automated-name-match
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* [[CHC_T00009407001_1]]
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* Reaction: [[RXN-11026]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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** Source: [[annotation-original_genome]]
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== Pathways  ==
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*** Assignment: automated-name-match
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* [[PWY0-901]], L-selenocysteine biosynthesis I (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-901 PWY0-901]
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* Reaction: [[RXN-12518]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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** Source: [[annotation-original_genome]]
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* [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6281 PWY-6281]
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*** Assignment: automated-name-match
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* Reaction: [[RXN-12669]]
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== Reconstruction information  ==
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** Source: [[annotation-original_genome]]
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* [[orthology]]:
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*** Assignment: automated-name-match
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** [[pantograph]]:
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* Reaction: [[RXN-14576]]
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*** [[galdieria.sulphuraria]]
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** Source: [[annotation-original_genome]]
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* [[annotation]]:
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*** Assignment: automated-name-match
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** [[pathwaytools]]:
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* Reaction: [[RXN-14771]]
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*** [[original_genome]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-14775]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-14785]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-14789]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-14796]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-16134]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-17113]]
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** Source: [[annotation-original_genome]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-7340]]
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* [[PWY-7291]]
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* [[PWY-7606]]
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* [[PWY-7288]]
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* [[PWY-5136]]
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* [[PWY-7726]]
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* [[PWY66-391]]
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* [[PWY-735]]
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* [[PWY-7007]]
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* [[PWY-6837]]
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* [[PWY-7337]]
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* [[PWY-7338]]
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* [[PWY-6920]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: left end position=171786}}
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** [http://www.genome.jp/dbget-bin/www_bget?R08218 R08218]
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{{#set: transcription direction=NEGATIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=173804}}
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{{#set: common name=serine--tRNA ligase, cytoplasmic}}
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{{#set: centisome position=26.294554    }}
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{{#set: ec number=EC-6.1.1.11}}
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{{#set: reaction associated=ACYL-COA-OXIDASE-RXN|RXN-10696|RXN-10706|RXN-10707|RXN-11026|RXN-12518|RXN-12669|RXN-14576|RXN-14771|RXN-14775|RXN-14785|RXN-14789|RXN-14796|RXN-16134|RXN-17113}}
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{{#set: gene associated=CHC_T00009366001_1|CHC_T00009407001|CHC_T00009407001_1}}
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{{#set: pathway associated=PWY-7340|PWY-7291|PWY-7606|PWY-7288|PWY-5136|PWY-7726|PWY66-391|PWY-735|PWY-7007|PWY-6837|PWY-7337|PWY-7338|PWY-6920}}
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{{#set: in pathway=PWY0-901|PWY-6281}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=original_genome}}
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Latest revision as of 17:11, 9 January 2019

Gene CHC_T00009531001

  • left end position:
    • 171786
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 173804
  • centisome position:
    • 26.294554
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=CHC_T00009531001&oldid=21389"