Difference between revisions of "2.4.1.223-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTEIN-TYROSINE-PHOSPHATASE-RXN PROTEIN-TYROSINE-PHOSPHATASE-RXN] == * direction: ** LEFT-TO-RIGHT...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.223-RXN 2.4.1.223-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTEIN-TYROSINE-PHOSPHATASE-RXN PROTEIN-TYROSINE-PHOSPHATASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.223-RXN 2.4.1.223-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.3.48 EC-3.1.3.48]
+
** [http://enzyme.expasy.org/EC/2.4.1.223 EC-2.4.1.223]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Protein-tyrosine-phosphates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[Protein-Tyrosines]][c]
+
** 1 [[UDP-N-ACETYL-D-GLUCOSAMINE]][c] '''+''' 1 [[GlcA-Gal-Gal-Xyl-Proteins]][c] '''=>''' 1 [[UDP]][c] '''+''' 1 [[GlcNAc-GlcA-Gal-Gal-Xyl-Protein]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a [protein]-L-tyrosine phosphate[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 a [protein]-L-tyrosine[c]
+
** 1 UDP-N-acetyl-α-D-glucosamine[c] '''+''' 1 a [protein]-3-O-(β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine[c] '''=>''' 1 UDP[c] '''+''' 1 a [protein]-3-O-(α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00004298001_1]]
+
* Gene: [[CHC_T00008553001_1]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
* [[CHC_T00006530001_1]]
+
* Gene: [[CHC_T00005911001_1]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
* [[CHC_T00002485001_1]]
+
* Gene: [[CHC_T00009017001_1]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
* [[CHC_T00008580001_1]]
+
* Gene: [[CHC_T00008592001_1]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00010079001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00010247001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00000714001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00008814001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00008436001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-6558]], heparan sulfate biosynthesis (late stages): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6558 PWY-6558]
 +
** '''1''' reactions found over '''13''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02585 R02585]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07397 R07397]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P06800 P06800]
+
−
** [http://www.uniprot.org/uniprot/P20483 P20483]
+
−
** [http://www.uniprot.org/uniprot/P23748 P23748]
+
−
** [http://www.uniprot.org/uniprot/P20417 P20417]
+
−
** [http://www.uniprot.org/uniprot/P18433 P18433]
+
−
** [http://www.uniprot.org/uniprot/P24666 P24666]
+
−
** [http://www.uniprot.org/uniprot/Q06180 Q06180]
+
−
** [http://www.uniprot.org/uniprot/P30307 P30307]
+
−
** [http://www.uniprot.org/uniprot/P25044 P25044]
+
−
** [http://www.uniprot.org/uniprot/P27574 P27574]
+
−
** [http://www.uniprot.org/uniprot/P29074 P29074]
+
−
** [http://www.uniprot.org/uniprot/P26045 P26045]
+
−
** [http://www.uniprot.org/uniprot/P35234 P35234]
+
−
** [http://www.uniprot.org/uniprot/P35832 P35832]
+
−
** [http://www.uniprot.org/uniprot/P30304 P30304]
+
−
** [http://www.uniprot.org/uniprot/Q03019 Q03019]
+
−
** [http://www.uniprot.org/uniprot/P11064 P11064]
+
−
** [http://www.uniprot.org/uniprot/P30306 P30306]
+
−
** [http://www.uniprot.org/uniprot/P30309 P30309]
+
−
** [http://www.uniprot.org/uniprot/P43378 P43378]
+
−
** [http://www.uniprot.org/uniprot/P29349 P29349]
+
−
** [http://www.uniprot.org/uniprot/P29351 P29351]
+
−
** [http://www.uniprot.org/uniprot/Q9W0G1 Q9W0G1]
+
−
** [http://www.uniprot.org/uniprot/P23471 P23471]
+
−
** [http://www.uniprot.org/uniprot/P35235 P35235]
+
−
** [http://www.uniprot.org/uniprot/P08575 P08575]
+
−
** [http://www.uniprot.org/uniprot/P18052 P18052]
+
−
** [http://www.uniprot.org/uniprot/P35822 P35822]
+
−
** [http://www.uniprot.org/uniprot/P23470 P23470]
+
−
** [http://www.uniprot.org/uniprot/P34138 P34138]
+
−
** [http://www.uniprot.org/uniprot/Q24495 Q24495]
+
−
** [http://www.uniprot.org/uniprot/Q9W4F5 Q9W4F5]
+
−
** [http://www.uniprot.org/uniprot/Q15426 Q15426]
+
−
** [http://www.uniprot.org/uniprot/P41499 P41499]
+
−
** [http://www.uniprot.org/uniprot/Q28613 Q28613]
+
−
** [http://www.uniprot.org/uniprot/Q28182 Q28182]
+
−
** [http://www.uniprot.org/uniprot/P15273 P15273]
+
−
** [http://www.uniprot.org/uniprot/Q91870 Q91870]
+
−
** [http://www.uniprot.org/uniprot/Q91976 Q91976]
+
−
** [http://www.uniprot.org/uniprot/Q12923 Q12923]
+
−
** [http://www.uniprot.org/uniprot/P41893 P41893]
+
−
** [http://www.uniprot.org/uniprot/Q62132 Q62132]
+
−
** [http://www.uniprot.org/uniprot/Q92124 Q92124]
+
−
** [http://www.uniprot.org/uniprot/P23468 P23468]
+
−
** [http://www.uniprot.org/uniprot/Q62917 Q62917]
+
−
** [http://www.uniprot.org/uniprot/Q64696 Q64696]
+
−
** [http://www.uniprot.org/uniprot/P40347 P40347]
+
−
** [http://www.uniprot.org/uniprot/P16620 P16620]
+
−
** [http://www.uniprot.org/uniprot/P30305 P30305]
+
−
** [http://www.uniprot.org/uniprot/P29352 P29352]
+
−
** [http://www.uniprot.org/uniprot/Q05909 Q05909]
+
−
** [http://www.uniprot.org/uniprot/Q91871 Q91871]
+
−
** [http://www.uniprot.org/uniprot/P49446 P49446]
+
−
** [http://www.uniprot.org/uniprot/Q9CDL7 Q9CDL7]
+
−
** [http://www.uniprot.org/uniprot/P30311 P30311]
+
−
** [http://www.uniprot.org/uniprot/Q64487 Q64487]
+
−
** [http://www.uniprot.org/uniprot/Q9JU65 Q9JU65]
+
−
** [http://www.uniprot.org/uniprot/P35992 P35992]
+
−
** [http://www.uniprot.org/uniprot/P0AAB2 P0AAB2]
+
−
** [http://www.uniprot.org/uniprot/Q9PN39 Q9PN39]
+
−
** [http://www.uniprot.org/uniprot/Q16825 Q16825]
+
−
** [http://www.uniprot.org/uniprot/Q12913 Q12913]
+
−
** [http://www.uniprot.org/uniprot/P48967 P48967]
+
−
** [http://www.uniprot.org/uniprot/Q60998 Q60998]
+
−
** [http://www.uniprot.org/uniprot/Q90815 Q90815]
+
−
** [http://www.uniprot.org/uniprot/Q90816 Q90816]
+
−
** [http://www.uniprot.org/uniprot/Q90817 Q90817]
+
−
** [http://www.uniprot.org/uniprot/P30310 P30310]
+
−
** [http://www.uniprot.org/uniprot/Q62604 Q62604]
+
−
** [http://www.uniprot.org/uniprot/Q64605 Q64605]
+
−
** [http://www.uniprot.org/uniprot/Q05209 Q05209]
+
−
** [http://www.uniprot.org/uniprot/Q60673 Q60673]
+
−
** [http://www.uniprot.org/uniprot/Q62130 Q62130]
+
−
** [http://www.uniprot.org/uniprot/Q15678 Q15678]
+
−
** [http://www.uniprot.org/uniprot/Q92932 Q92932]
+
−
** [http://www.uniprot.org/uniprot/Q90687 Q90687]
+
−
** [http://www.uniprot.org/uniprot/P79923 P79923]
+
−
** [http://www.uniprot.org/uniprot/O00197 O00197]
+
−
** [http://www.uniprot.org/uniprot/Q61042 Q61042]
+
−
** [http://www.uniprot.org/uniprot/Q9ERM5 Q9ERM5]
+
−
** [http://www.uniprot.org/uniprot/P35236 P35236]
+
−
** [http://www.uniprot.org/uniprot/P35821 P35821]
+
−
** [http://www.uniprot.org/uniprot/Q06124 Q06124]
+
−
** [http://www.uniprot.org/uniprot/O13016 O13016]
+
−
** [http://www.uniprot.org/uniprot/P23467 P23467]
+
−
** [http://www.uniprot.org/uniprot/P23469 P23469]
+
−
** [http://www.uniprot.org/uniprot/P35233 P35233]
+
−
** [http://www.uniprot.org/uniprot/P30634 P30634]
+
−
** [http://www.uniprot.org/uniprot/P28827 P28827]
+
−
** [http://www.uniprot.org/uniprot/P28828 P28828]
+
−
** [http://www.uniprot.org/uniprot/Q64497 Q64497]
+
−
** [http://www.uniprot.org/uniprot/P29350 P29350]
+
−
** [http://www.uniprot.org/uniprot/P30303 P30303]
+
−
** [http://www.uniprot.org/uniprot/P32586 P32586]
+
−
** [http://www.uniprot.org/uniprot/P32587 P32587]
+
−
** [http://www.uniprot.org/uniprot/Q02256 Q02256]
+
−
** [http://www.uniprot.org/uniprot/Q8VBV0 Q8VBV0]
+
−
** [http://www.uniprot.org/uniprot/Q8R169 Q8R169]
+
−
** [http://www.uniprot.org/uniprot/Q64512 Q64512]
+
−
** [http://www.uniprot.org/uniprot/Q29029 Q29029]
+
−
** [http://www.uniprot.org/uniprot/P38148 P38148]
+
−
** [http://www.uniprot.org/uniprot/Q64604 Q64604]
+
−
** [http://www.uniprot.org/uniprot/Q63745 Q63745]
+
−
** [http://www.uniprot.org/uniprot/P39155 P39155]
+
−
** [http://www.uniprot.org/uniprot/Q64494 Q64494]
+
−
** [http://www.uniprot.org/uniprot/Q62728 Q62728]
+
−
** [http://www.uniprot.org/uniprot/Q64502 Q64502]
+
−
** [http://www.uniprot.org/uniprot/Q64504 Q64504]
+
−
** [http://www.uniprot.org/uniprot/Q46630 Q46630]
+
−
** [http://www.uniprot.org/uniprot/Q17024 Q17024]
+
−
** [http://www.uniprot.org/uniprot/P35831 P35831]
+
−
** [http://www.uniprot.org/uniprot/Q00684 Q00684]
+
−
** [http://www.uniprot.org/uniprot/Q16827 Q16827]
+
−
** [http://www.uniprot.org/uniprot/P06652 P06652]
+
−
** [http://www.uniprot.org/uniprot/P29461 P29461]
+
−
** [http://www.uniprot.org/uniprot/Q29500 Q29500]
+
−
** [http://www.uniprot.org/uniprot/Q62370 Q62370]
+
−
** [http://www.uniprot.org/uniprot/Q92735 Q92735]
+
−
** [http://www.uniprot.org/uniprot/Q45408 Q45408]
+
−
** [http://www.uniprot.org/uniprot/O82710 O82710]
+
−
** [http://www.uniprot.org/uniprot/O88488 O88488]
+
−
** [http://www.uniprot.org/uniprot/O88902 O88902]
+
−
** [http://www.uniprot.org/uniprot/O94044 O94044]
+
−
** [http://www.uniprot.org/uniprot/O44329 O44329]
+
−
** [http://www.uniprot.org/uniprot/O76282 O76282]
+
−
** [http://www.uniprot.org/uniprot/Q98936 Q98936]
+
−
** [http://www.uniprot.org/uniprot/Q91054 Q91054]
+
−
** [http://www.uniprot.org/uniprot/Q22582 Q22582]
+
−
** [http://www.uniprot.org/uniprot/Q39491 Q39491]
+
−
** [http://www.uniprot.org/uniprot/O65190 O65190]
+
−
** [http://www.uniprot.org/uniprot/P16621 P16621]
+
−
** [http://www.uniprot.org/uniprot/P10586 P10586]
+
−
** [http://www.uniprot.org/uniprot/Q64224 Q64224]
+
−
** [http://www.uniprot.org/uniprot/P18031 P18031]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-3.1.3.48}}
+
{{#set: ec number=EC-2.4.1.223}}
−
{{#set: gene associated=CHC_T00004298001_1|CHC_T00006530001_1|CHC_T00002485001_1|CHC_T00008580001_1}}
+
{{#set: gene associated=CHC_T00008553001_1|CHC_T00005911001_1|CHC_T00009017001_1|CHC_T00008592001_1|CHC_T00010079001_1|CHC_T00010247001_1|CHC_T00000714001_1|CHC_T00008814001_1|CHC_T00008436001_1}}
−
{{#set: in pathway=}}
+
{{#set: in pathway=PWY-6558}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=galdieria.sulphuraria}}
 

Latest revision as of 15:02, 23 May 2018

Reaction 2.4.1.223-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6558, heparan sulfate biosynthesis (late stages): PWY-6558
    • 1 reactions found over 13 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=2.4.1.223-RXN&oldid=12964"