Difference between revisions of "PWY-5120"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALPHAGALACTOSID-RXN ALPHAGALACTOSID-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** alpha-g...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALPHAGALACTOSID-RXN ALPHAGALACTOSID-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5120 PWY-5120] ==
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* direction:
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** LEFT-TO-RIGHT
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* common name:
 
* common name:
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** alpha-galactosidase
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** geranylgeranyl diphosphate biosynthesis
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* ec number:
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* taxonomic range:
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** [http://enzyme.expasy.org/EC/3.2.1.22 EC-3.2.1.22]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 
* Synonym(s):
 
* Synonym(s):
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** GGPP biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''1''' reactions in the full pathway
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** 1 [[MELIBIOSE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Glucopyranose]][c] '''+''' 1 [[D-galactopyranose]][c]
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* [[FARNESYLTRANSTRANSFERASE-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 melibiose[c] '''+''' 1 H2O[c] '''=>''' 1 D-glucopyranose[c] '''+''' 1 D-galactopyranose[c]
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*** [[CHC_T00006851001_1]]
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*** [[CHC_T00004833001_1]]
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== Genes associated with this reaction  ==
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** 3 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-galdieria.sulphuraria]]
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* [[CHC_T00008497001_1]]
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*** [[orthology-arabidopsis_thaliana]]
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** [[pantograph]]-[[a.taliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[CHC_T00008413001]]
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== Reaction(s) not found ==
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** ORIGINAL_GENOME
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***AUTOMATED-NAME-MATCH
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* [[CHC_T00008413001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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== Pathways  ==
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* [[PWY0-1301]], melibiose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1301 PWY0-1301]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[galdieria.sulphuraria]]
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*** [[a.taliana]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[original_genome]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* ARACYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28663 28663]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-5120 PWY-5120]
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* LIGAND-RXN:
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{{#set: common name=geranylgeranyl diphosphate biosynthesis}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01101 R01101]
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{{#set: taxonomic range=TAX-2759}}
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* UNIPROT:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.uniprot.org/uniprot/P16551 P16551]
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{{#set: taxonomic range=TAX-2157}}
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** [http://www.uniprot.org/uniprot/P27756 P27756]
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{{#set: common name=GGPP biosynthesis}}
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** [http://www.uniprot.org/uniprot/P04824 P04824]
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{{#set: reaction found=1}}
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** [http://www.uniprot.org/uniprot/P06720 P06720]
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{{#set: total reaction=1}}
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** [http://www.uniprot.org/uniprot/P06280 P06280]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/P51569 P51569]
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** [http://www.uniprot.org/uniprot/O93816 O93816]
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** [http://www.uniprot.org/uniprot/Q03647 Q03647]
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** [http://www.uniprot.org/uniprot/P14749 P14749]
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** [http://www.uniprot.org/uniprot/P28351 P28351]
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** [http://www.uniprot.org/uniprot/P43467 P43467]
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** [http://www.uniprot.org/uniprot/Q99172 Q99172]
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** [http://www.uniprot.org/uniprot/P41945 P41945]
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** [http://www.uniprot.org/uniprot/P41946 P41946]
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** [http://www.uniprot.org/uniprot/P41947 P41947]
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** [http://www.uniprot.org/uniprot/Q92457 Q92457]
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** [http://www.uniprot.org/uniprot/Q92456 Q92456]
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** [http://www.uniprot.org/uniprot/Q92451 Q92451]
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** [http://www.uniprot.org/uniprot/O04943 O04943]
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** [http://www.uniprot.org/uniprot/O04944 O04944]
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** [http://www.uniprot.org/uniprot/Q39811 Q39811]
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** [http://www.uniprot.org/uniprot/Q41100 Q41100]
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** [http://www.uniprot.org/uniprot/Q42656 Q42656]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=alpha-galactosidase}}
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{{#set: ec number=EC-3.2.1.22}}
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{{#set: gene associated=CHC_T00008497001_1|CHC_T00008413001|CHC_T00008413001_1}}
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{{#set: in pathway=PWY0-1301}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=original_genome}}
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Latest revision as of 16:21, 9 January 2019

Pathway PWY-5120

  • common name:
    • geranylgeranyl diphosphate biosynthesis
  • taxonomic range:
  • Synonym(s):
    • GGPP biosynthesis

Reaction(s) found

1 reactions found over 1 reactions in the full pathway

Reaction(s) not found

External links





Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PWY-5120&oldid=21626"