Difference between revisions of "PWY-735"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12693 RXN-12693] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12693 RXN-12693] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-735 PWY-735] ==
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* direction:
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* common name:
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** LEFT-TO-RIGHT
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** jasmonic acid biosynthesis
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* ec number:
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* taxonomic range:
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** [http://enzyme.expasy.org/EC/1.1.1.145 EC-1.1.1.145]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* Synonym(s):
 
* Synonym(s):
 +
** jasmonate biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''13''' reactions found over '''19''' reactions in the full pathway
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** 1 [[CHOLESTEROL]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CPD-13684]][c] '''+''' 1 [[NADH]][c]
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* [[RXN-10696]]
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* With common name(s):
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** 10 associated gene(s):
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** 1 cholesterol[c] '''+''' 1 NAD+[c] '''=>''' 1 H+[c] '''+''' 1 cholest-5-en-3-one[c] '''+''' 1 NADH[c]
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*** [[CHC_T00009142001_1]]
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*** [[CHC_T00008935001]]
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== Genes associated with this reaction  ==
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*** [[CHC_T00008400001_1]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[CHC_T00008478001_1]]
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* [[CHC_T00007359001_1]]
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*** [[CHC_T00008935001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[CHC_T00008400001]]
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== Pathways  ==
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*** [[CHC_T00009142001]]
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* [[PWY-6946]], cholesterol degradation to androstenedione II (cholesterol dehydrogenase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6946 PWY-6946]
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*** [[CHC_T00009531001]]
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** '''3''' reactions found over '''22''' reactions in the full pathway
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*** [[CHC_T00007910001_1]]
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== Reconstruction information  ==
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*** [[CHC_T00009531001_1]]
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* [[orthology]]:
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** 3 reconstruction source(s) associated:
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** [[pantograph]]:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[RXN-10697]]
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** 4 associated gene(s):
 +
*** [[CHC_T00009110001_1]]
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*** [[CHC_T00009349001_1]]
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*** [[CHC_T00009422001_1]]
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*** [[CHC_T00009190001_1]]
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** 2 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[RXN-10698]]
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** 3 associated gene(s):
 +
*** [[CHC_T00008557001_1]]
 +
*** [[CHC_T00009349001_1]]
 +
*** [[CHC_T00009422001_1]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
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* [[RXN-10699]]
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** 2 associated gene(s):
 +
*** [[CHC_T00009349001_1]]
 +
*** [[CHC_T00009422001_1]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
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* [[RXN-10700]]
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** 2 associated gene(s):
 +
*** [[CHC_T00009349001_1]]
 +
*** [[CHC_T00009422001_1]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
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* [[RXN-10701]]
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** 2 associated gene(s):
 +
*** [[CHC_T00009422001_1]]
 +
*** [[CHC_T00009349001_1]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
* [[RXN-10702]]
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** 3 associated gene(s):
 +
*** [[CHC_T00009349001_1]]
 +
*** [[CHC_T00008557001_1]]
 +
*** [[CHC_T00009422001_1]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
* [[RXN-10703]]
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** 3 associated gene(s):
 +
*** [[CHC_T00008557001_1]]
 +
*** [[CHC_T00009349001_1]]
 +
*** [[CHC_T00009422001_1]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
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* [[RXN-10704]]
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** 4 associated gene(s):
 +
*** [[CHC_T00009422001_1]]
 +
*** [[CHC_T00009190001_1]]
 +
*** [[CHC_T00009349001_1]]
 +
*** [[CHC_T00009110001_1]]
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** 2 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
*** [[orthology-ectocarpus_siliculosus]]
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* [[RXN-10705]]
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** 4 associated gene(s):
 +
*** [[CHC_T00009422001_1]]
 +
*** [[CHC_T00009190001_1]]
 +
*** [[CHC_T00009110001_1]]
 +
*** [[CHC_T00009349001_1]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
* [[RXN-10706]]
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** 10 associated gene(s):
 +
*** [[CHC_T00008935001_1]]
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*** [[CHC_T00008935001]]
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*** [[CHC_T00009142001_1]]
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*** [[CHC_T00009142001]]
 +
*** [[CHC_T00008478001_1]]
 +
*** [[CHC_T00009531001_1]]
 +
*** [[CHC_T00009531001]]
 +
*** [[CHC_T00008400001]]
 +
*** [[CHC_T00007910001_1]]
 +
*** [[CHC_T00008400001_1]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
*** [[annotation-original_genome]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
* [[RXN-10707]]
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** 10 associated gene(s):
 +
*** [[CHC_T00008400001_1]]
 +
*** [[CHC_T00009142001]]
 +
*** [[CHC_T00009531001]]
 +
*** [[CHC_T00008935001_1]]
 +
*** [[CHC_T00007910001_1]]
 +
*** [[CHC_T00009142001_1]]
 +
*** [[CHC_T00009531001_1]]
 +
*** [[CHC_T00008400001]]
 +
*** [[CHC_T00008478001_1]]
 +
*** [[CHC_T00008935001]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
*** [[annotation-original_genome]]
 +
*** [[orthology-ectocarpus_siliculosus]]
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* [[RXN-1321]]
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** 2 associated gene(s):
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*** [[CHC_T00008739001]]
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*** [[CHC_T00008739001_1]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-original_genome]]
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=12-OXOPHYTODIENOATE-REDUCTASE-RXN 12-OXOPHYTODIENOATE-REDUCTASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=ALLENE-OXIDE-CYCLASE-RXN ALLENE-OXIDE-CYCLASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10695 RXN-10695]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10708 RXN-10708]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-745 RXN-745]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-19 RXN1F-19]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* ARACYC:
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{{#set: ec number=EC-1.1.1.145}}
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-735 PWY-735]
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{{#set: gene associated=CHC_T00007359001_1}}
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{{#set: common name=jasmonic acid biosynthesis}}
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{{#set: in pathway=PWY-6946}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: reconstruction category=orthology}}
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{{#set: common name=jasmonate biosynthesis}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reaction found=13}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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{{#set: total reaction=19}}
 +
{{#set: completion rate=68.0}}

Latest revision as of 17:28, 9 January 2019

Pathway PWY-735

  • common name:
    • jasmonic acid biosynthesis
  • taxonomic range:
  • Synonym(s):
    • jasmonate biosynthesis

Reaction(s) found

13 reactions found over 19 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PWY-735&oldid=21783"