Difference between revisions of "GCVP-RXN"

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(Created page with "Category:Gene == Gene CHC_T00008428001 == * left end position: ** 4551 * transcription direction: ** POSITIVE * right end position: ** 5378 * centisome position: ** 1.5779...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene CHC_T00008428001 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVP-RXN GCVP-RXN] ==
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* left end position:
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* direction:
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** 4551
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** REVERSIBLE
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* transcription direction:
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* common name:
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** POSITIVE
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** glycine dehydrogenase (decarboxylating), mitochondrial precursor
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* right end position:
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* ec number:
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** 5378
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** [http://enzyme.expasy.org/EC/1.4.4.2 EC-1.4.4.2]
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* centisome position:
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** 1.5779455   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[PHOSPHAGLYPSYN-RXN]]
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* With identifiers:
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** original_genome
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** 1 [[PROTON]][c] '''+''' 1 [[PROTEIN-LIPOYLLYSINE]][c] '''+''' 1 [[GLY]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c]
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***automated-name-match
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* With common name(s):
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== Pathways associated ==
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** 1 H+[c] '''+''' 1 a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine[c] '''+''' 1 glycine[c] '''<=>''' 1 CO2[c] '''+''' 1 a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine[c]
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* [[PWY4FS-7]]
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* [[PWY4FS-8]]
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== Genes associated with this reaction  ==
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* [[PWY-5269]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[PWY-7817]]
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* Gene: [[CHC_T00009122001]]
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* [[PWY-5668]]
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** Source: [[annotation-original_genome]]
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* [[PWY0-1545]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00007347001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* Gene: [[CHC_T00005686001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* Gene: [[CHC_T00009122001_1]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00007880001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* Gene: [[CHC_T00007762001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* Gene: [[CHC_T00007428001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* Gene: [[CHC_T00008727001_1]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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== Pathways ==
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* [[GLYCINE-SYN2-PWY]], glycine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE-SYN2-PWY GLYCINE-SYN2-PWY]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[GLYCLEAV-PWY]], glycine cleavage: [http://metacyc.org/META/NEW-IMAGE?object=GLYCLEAV-PWY GLYCLEAV-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-original_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=4551}}
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* LIGAND-RXN:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03425 R03425]
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{{#set: right end position=5378}}
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* UNIPROT:
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{{#set: centisome position=1.5779455    }}
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** [http://www.uniprot.org/uniprot/P26969 P26969]
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{{#set: reaction associated=PHOSPHAGLYPSYN-RXN}}
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** [http://www.uniprot.org/uniprot/Q9UXT1 Q9UXT1]
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{{#set: pathway associated=PWY4FS-7|PWY4FS-8|PWY-5269|PWY-7817|PWY-5668|PWY0-1545}}
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** [http://www.uniprot.org/uniprot/Q9JT86 Q9JT86]
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** [http://www.uniprot.org/uniprot/Q9UXT0 Q9UXT0]
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** [http://www.uniprot.org/uniprot/P23378 P23378]
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** [http://www.uniprot.org/uniprot/P33195 P33195]
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** [http://www.uniprot.org/uniprot/O80988 O80988]
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** [http://www.uniprot.org/uniprot/Q94B78 Q94B78]
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** [http://www.uniprot.org/uniprot/O32915 O32915]
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** [http://www.uniprot.org/uniprot/O22575 O22575]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=glycine dehydrogenase (decarboxylating), mitochondrial precursor}}
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{{#set: ec number=EC-1.4.4.2}}
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{{#set: gene associated=CHC_T00009122001|CHC_T00007347001_1|CHC_T00005686001_1|CHC_T00009122001_1|CHC_T00007880001_1|CHC_T00007762001_1|CHC_T00007428001_1|CHC_T00008727001_1}}
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{{#set: in pathway=GLYCINE-SYN2-PWY|GLYCLEAV-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 16:37, 9 January 2019

Reaction GCVP-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • glycine dehydrogenase (decarboxylating), mitochondrial precursor
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=GCVP-RXN&oldid=22000"