Difference between revisions of "RXN-11737"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVP-RXN GCVP-RXN] == * direction: ** REVERSIBLE * common name: ** glycine dehydrogenase (decarboxy...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVP-RXN GCVP-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11737 RXN-11737] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 
* common name:
 
* common name:
−
** glycine dehydrogenase (decarboxylating), mitochondrial precursor
+
** aspartate aminotransferase
 +
** Aspartate aminotransferase
 +
** probable aspartate aminotransferase
 +
** Aspartate transaminase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.4.4.2 EC-1.4.4.2]
+
** [http://enzyme.expasy.org/EC/2.6.1.1 EC-2.6.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GLY]][c] '''+''' 1 [[PROTEIN-LIPOYLLYSINE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[L-CYSTEATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[CPD-380]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 glycine[c] '''+''' 1 a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine[c] '''+''' 1 H+[c] '''<=>''' 1 a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine[c] '''+''' 1 CO2[c]
+
** 1 2-oxoglutarate[c] '''+''' 1 L-cysteate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 3-sulfopyruvate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00007428001_1]]
+
* Gene: [[CHC_T00005085001_1]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
* [[CHC_T00007347001_1]]
+
** Source: [[orthology-arabidopsis_thaliana]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
* Gene: [[CHC_T00009477001]]
−
* [[CHC_T00007762001_1]]
+
** Source: [[annotation-original_genome]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[CHC_T00007880001_1]]
+
* Gene: [[CHC_T00010017001]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[annotation-original_genome]]
−
* [[CHC_T00009122001]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** ORIGINAL_GENOME
+
* Gene: [[CHC_T00010197001]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[annotation-original_genome]]
−
* [[CHC_T00005686001_1]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
* Gene: [[CHC_T00006498001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00008432001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00009477001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-arabidopsis_thaliana]]
 +
* Gene: [[CHC_T00003344001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[GLYCINE-SYN2-PWY]], glycine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE-SYN2-PWY GLYCINE-SYN2-PWY]
+
* [[PWY-6642]], (R)-cysteate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6642 PWY-6642]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[GLYCLEAV-PWY]], glycine cleavage: [http://metacyc.org/META/NEW-IMAGE?object=GLYCLEAV-PWY GLYCLEAV-PWY]
+
* [[PWY-6643]], coenzyme M biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6643 PWY-6643]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6638]], sulfolactate degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6638 PWY-6638]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-galdieria.sulphuraria]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-arabidopsis_thaliana]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[original_genome]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03425 R03425]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02433 R02433]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P26969 P26969]
+
−
** [http://www.uniprot.org/uniprot/Q9UXT1 Q9UXT1]
+
−
** [http://www.uniprot.org/uniprot/Q9JT86 Q9JT86]
+
−
** [http://www.uniprot.org/uniprot/Q9UXT0 Q9UXT0]
+
−
** [http://www.uniprot.org/uniprot/P23378 P23378]
+
−
** [http://www.uniprot.org/uniprot/P33195 P33195]
+
−
** [http://www.uniprot.org/uniprot/O80988 O80988]
+
−
** [http://www.uniprot.org/uniprot/Q94B78 Q94B78]
+
−
** [http://www.uniprot.org/uniprot/O32915 O32915]
+
−
** [http://www.uniprot.org/uniprot/O22575 O22575]
+
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=glycine dehydrogenase (decarboxylating), mitochondrial precursor}}
+
{{#set: common name=aspartate aminotransferase}}
−
{{#set: ec number=EC-1.4.4.2}}
+
{{#set: common name=Aspartate aminotransferase}}
−
{{#set: gene associated=CHC_T00007428001_1|CHC_T00007347001_1|CHC_T00007762001_1|CHC_T00007880001_1|CHC_T00009122001|CHC_T00005686001_1}}
+
{{#set: common name=probable aspartate aminotransferase}}
−
{{#set: in pathway=GLYCINE-SYN2-PWY|GLYCLEAV-PWY}}
+
{{#set: common name=Aspartate transaminase}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: ec number=EC-2.6.1.1}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: gene associated=CHC_T00005085001_1|CHC_T00009477001|CHC_T00010017001|CHC_T00010197001|CHC_T00006498001_1|CHC_T00008432001|CHC_T00009477001_1|CHC_T00003344001_1}}
−
{{#set: reconstruction source=galdieria.sulphuraria}}
+
{{#set: in pathway=PWY-6642|PWY-6643|PWY-6638}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
−
{{#set: reconstruction source=original_genome}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 16:37, 9 January 2019

Reaction RXN-11737

  • direction:
    • REVERSIBLE
  • common name:
    • aspartate aminotransferase
    • Aspartate aminotransferase
    • probable aspartate aminotransferase
    • Aspartate transaminase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 2-oxoglutarate[c] + 1 L-cysteate[c] <=> 1 L-glutamate[c] + 1 3-sulfopyruvate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6642, (R)-cysteate degradation: PWY-6642
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6643, coenzyme M biosynthesis II: PWY-6643
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-6638, sulfolactate degradation III: PWY-6638
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-11737&oldid=22001"