Difference between revisions of "RXN-12518"

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(Created page with "Category:Gene == Gene CHC_T00009501001 == * left end position: ** 29034 * transcription direction: ** POSITIVE * right end position: ** 31601 * centisome position: ** 74.1...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene CHC_T00009501001 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12518 RXN-12518] ==
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* left end position:
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* direction:
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** 29034
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** acyl-CoA oxidase
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* right end position:
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* ec number:
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** 31601
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** [http://enzyme.expasy.org/EC/1.3.3.6 EC-1.3.3.6]
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* centisome position:
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** 74.123055   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[PROTEIN-KINASE-RXN]]
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* With identifiers:
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** original_genome
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** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[cis-5-enoyl-CoA]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[trans-2-cis-5-dienoyl-CoA]][c]
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***automated-name-match
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* With common name(s):
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== Pathways associated ==
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** 1 oxygen[c] '''+''' 1 a cis-5-enoyl-CoA[c] '''=>''' 1 hydrogen peroxide[c] '''+''' 1 a trans2,cis-5-dienoyl-CoA[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[CHC_T00009142001_1]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00008478001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00008935001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00009531001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00007910001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00008400001]]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00009531001]]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00009142001]]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00008400001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00008935001]]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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== Pathways ==
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* [[PWY-6837]], fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6837 PWY-6837]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-original_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=29034}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=acyl-CoA oxidase}}
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{{#set: right end position=31601}}
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{{#set: ec number=EC-1.3.3.6}}
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{{#set: centisome position=74.123055    }}
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{{#set: gene associated=CHC_T00009142001_1|CHC_T00008478001_1|CHC_T00008935001_1|CHC_T00009531001_1|CHC_T00007910001_1|CHC_T00008400001|CHC_T00009531001|CHC_T00009142001|CHC_T00008400001_1|CHC_T00008935001}}
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{{#set: reaction associated=PROTEIN-KINASE-RXN}}
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{{#set: in pathway=PWY-6837}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 16:40, 9 January 2019

Reaction RXN-12518

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • acyl-CoA oxidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6837, fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent): PWY-6837
    • 3 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-12518&oldid=22103"