Difference between revisions of "CHC 950"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5114 RXN0-5114] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5114 RXN0-5114] ==
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== Gene CHC_950 ==
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* direction:
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* common name:
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** LEFT-TO-RIGHT
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** rbcL
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/3.1.3.3 EC-3.1.3.3]
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** 144291
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* transcription direction:
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** POSITIVE
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* right end position:
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** 145757
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* centisome position:
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** 80.12338   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN]]
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** 1 [[3-P-SERINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[SER]][c]
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** Source: [[annotation-original_genome]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 3-phospho-L-serine[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 L-serine[c]
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* Reaction: [[RXN-961]]
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** Source: [[annotation-original_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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== Pathways associated ==
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* [[CHC_T00006166001_1]]
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* [[PWY-181]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[PWY-5532]]
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** [[pantograph]]-[[a.taliana]]
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* [[PWY-5723]]
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* [[CHC_T00007222001_1]]
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* [[CALVIN-PWY]]
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** [[pantograph]]-[[a.taliana]]
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* [[CHC_T00005163001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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** [[pantograph]]-[[a.taliana]]
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== Pathways ==
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* [[SERSYN-PWY]], L-serine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SERSYN-PWY SERSYN-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[galdieria.sulphuraria]]
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*** [[a.taliana]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[original_genome]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: common name=rbcL}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21208 21208]
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{{#set: left end position=144291}}
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* LIGAND-RXN:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00582 R00582]
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{{#set: right end position=145757}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: centisome position=80.12338    }}
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{{#set: ec number=EC-3.1.3.3}}
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{{#set: reaction associated=RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN|RXN-961}}
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{{#set: gene associated=CHC_T00006166001_1|CHC_T00007222001_1|CHC_T00005163001_1}}
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{{#set: pathway associated=PWY-181|PWY-5532|PWY-5723|CALVIN-PWY}}
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{{#set: in pathway=SERSYN-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=original_genome}}
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Latest revision as of 16:35, 9 January 2019

Gene CHC_950

  • common name:
    • rbcL
  • left end position:
    • 144291
  • transcription direction:
    • POSITIVE
  • right end position:
    • 145757
  • centisome position:
    • 80.12338
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=CHC_950&oldid=21956"