Difference between revisions of "HOMOCYSMET-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-14925 CPD-14925] == * smiles: ** CCCCCCC=CCC(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-14925 CPD-14925] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOCYSMET-RXN HOMOCYSMET-RXN] ==
−
* smiles:
+
* direction:
−
** CCCCCCC=CCC(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-])=O
+
** REVERSIBLE
−
* inchi key:
+
−
** InChIKey=CQGVNMQHZQJNII-UUSBZYPOSA-J
+
 
* common name:
 
* common name:
−
** 3-cis-decenoyl-CoA
+
** 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase
−
* molecular weight:
+
* ec number:
−
** 915.738   
+
** [http://enzyme.expasy.org/EC/2.1.1.14 EC-2.1.1.14]
 
* Synonym(s):
 
* Synonym(s):
−
** (3Z)-dec-3-enoyl-CoA
 
−
** 10:1(n-7)-CoA
 
−
** 10:1-Δ3-CoA
 
−
** (3Z)-decenoyl-CoA
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
== Reaction(s) known to produce the compound ==
+
* With identifiers:
−
* [[RXN-17799]]
+
** 1 [[HOMO-CYS]][c] '''+''' 1 [[CPD-1302]][c] '''<=>''' 1 [[MET]][c] '''+''' 1 [[CPD-1301]][c]
−
== Reaction(s) of unknown directionality ==
+
* With common name(s):
 +
** 1 L-homocysteine[c] '''+''' 1 N5-methyl--tetrahydropteroyl tri-L-glutamate[c] '''<=>''' 1 L-methionine[c] '''+''' 1 tetrahydropteroyl tri-L-glutamate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[CHC_T00009326001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
** Source: [[orthology-arabidopsis_thaliana]]
 +
* Gene: [[CHC_T00009326001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00005524001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
== Pathways  ==
 +
* [[PWY-5041]], S-adenosyl-L-methionine cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5041 PWY-5041]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-702]], L-methionine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-702 PWY-702]
 +
** '''4''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6151]], S-adenosyl-L-methionine cycle I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6151 PWY-6151]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[HSERMETANA-PWY]], L-methionine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=HSERMETANA-PWY HSERMETANA-PWY]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=HOMOSER-METSYN-PWY HOMOSER-METSYN-PWY]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-arabidopsis_thaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* RHEA:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=90659267 90659267]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21196 21196]
−
{{#set: smiles=CCCCCCC=CCC(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-])=O}}
+
* UNIPROT:
−
{{#set: inchi key=InChIKey=CQGVNMQHZQJNII-UUSBZYPOSA-J}}
+
** [http://www.uniprot.org/uniprot/P25665 P25665]
−
{{#set: common name=3-cis-decenoyl-CoA}}
+
** [http://www.uniprot.org/uniprot/P45331 P45331]
−
{{#set: molecular weight=915.738    }}
+
** [http://www.uniprot.org/uniprot/Q9PN94 Q9PN94]
−
{{#set: common name=(3Z)-dec-3-enoyl-CoA|10:1(n-7)-CoA|10:1-&Delta;3-CoA|(3Z)-decenoyl-CoA}}
+
** [http://www.uniprot.org/uniprot/O26869 O26869]
−
{{#set: produced by=RXN-17799}}
+
** [http://www.uniprot.org/uniprot/Q9JUT6 Q9JUT6]
 +
** [http://www.uniprot.org/uniprot/Q9CG55 Q9CG55]
 +
** [http://www.uniprot.org/uniprot/P05694 P05694]
 +
** [http://www.uniprot.org/uniprot/Q42699 Q42699]
 +
** [http://www.uniprot.org/uniprot/Q39586 Q39586]
 +
** [http://www.uniprot.org/uniprot/O48613 O48613]
 +
** [http://www.uniprot.org/uniprot/P93263 P93263]
 +
** [http://www.uniprot.org/uniprot/Q9UT19 Q9UT19]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04405 R04405]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase}}
 +
{{#set: ec number=EC-2.1.1.14}}
 +
{{#set: gene associated=CHC_T00009326001_1|CHC_T00009326001|CHC_T00005524001_1}}
 +
{{#set: in pathway=PWY-5041|PWY-702|PWY-6151|HSERMETANA-PWY|HOMOSER-METSYN-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 17:48, 9 January 2019

Reaction HOMOCYSMET-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-homocysteine[c] + 1 N5-methyl--tetrahydropteroyl tri-L-glutamate[c] <=> 1 L-methionine[c] + 1 tetrahydropteroyl tri-L-glutamate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5041, S-adenosyl-L-methionine cycle II: PWY-5041
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-702, L-methionine biosynthesis II: PWY-702
    • 4 reactions found over 8 reactions in the full pathway
  • PWY-6151, S-adenosyl-L-methionine cycle I: PWY-6151
    • 3 reactions found over 6 reactions in the full pathway
  • HSERMETANA-PWY, L-methionine biosynthesis III: HSERMETANA-PWY
    • 2 reactions found over 4 reactions in the full pathway
  • HOMOSER-METSYN-PWY, L-methionine biosynthesis I: HOMOSER-METSYN-PWY
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=HOMOCYSMET-RXN&oldid=22301"