Difference between revisions of "PWY-6728"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14950 RXN-14950] == * direction: ** LEFT-TO-RIGHT * common name: ** Lipoate synthase * ec numbe...")
 
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14950 RXN-14950] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728] ==
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* direction:
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** LEFT-TO-RIGHT
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* common name:
 
* common name:
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** Lipoate synthase
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** methylaspartate cycle
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* ec number:
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* taxonomic range:
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** [http://enzyme.expasy.org/EC/2.8.1.8 EC-2.8.1.8]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183963 TAX-183963]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''9''' reactions found over '''19''' reactions in the full pathway
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** 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''+''' 2 [[Sulfurated-Sulfur-Acceptors]][c] '''+''' 1 [[Octanoylated-Gcv-H]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 2 [[MET]][c] '''+''' 2 [[CH33ADO]][c] '''+''' 2 [[Unsulfurated-Sulfur-Acceptors]][c] '''+''' 1 [[PROTEIN-LIPOYLLYSINE]][c] '''+''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c]
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* [[ACONITATEDEHYDR-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 2 a reduced [2Fe-2S] ferredoxin[c] '''+''' 2 a sulfurated [sulfur carrier][c] '''+''' 1 a [glycine-cleavage complex H protein] N6-octanoyl-L-lysine[c] '''+''' 2 S-adenosyl-L-methionine[c] '''=>''' 2 L-methionine[c] '''+''' 2 5'-deoxyadenosine[c] '''+''' 2 an unsulfurated [sulfur carrier][c] '''+''' 1 a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine[c] '''+''' 2 an oxidized [2Fe-2S] ferredoxin[c]
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*** [[CHC_T00009087001_1]]
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*** [[CHC_T00008781001_1]]
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== Genes associated with this reaction  ==
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*** [[CHC_T00008781001]]
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Genes have been associated with this reaction based on different elements listed below.
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** 3 reconstruction source(s) associated:
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* [[CHC_T00008509001]]
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*** [[orthology-galdieria.sulphuraria]]
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** ORIGINAL_GENOME
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*** [[annotation-original_genome]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-ectocarpus_siliculosus]]
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* [[CHC_T00008509001_1]]
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* [[ACONITATEHYDR-RXN]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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** 3 associated gene(s):
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== Pathways  ==
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*** [[CHC_T00009087001_1]]
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* [[PWY-7382]], lipoate biosynthesis and incorporation (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7382 PWY-7382]
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*** [[CHC_T00008781001]]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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*** [[CHC_T00008781001_1]]
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== Reconstruction information  ==
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** 3 reconstruction source(s) associated:
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* [[orthology]]:
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*** [[orthology-galdieria.sulphuraria]]
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** [[pantograph]]:
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*** [[annotation-original_genome]]
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*** [[galdieria.sulphuraria]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[annotation]]:
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* [[CITSYN-RXN]]
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** [[pathwaytools]]:
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** 1 associated gene(s):
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*** [[original_genome]]
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*** [[CHC_T00007817001_1]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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* [[FUMHYDR-RXN]]
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** 2 associated gene(s):
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*** [[CHC_T00008951001_1]]
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*** [[CHC_T00008951001]]
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** 4 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[GLUTAMATE-DEHYDROGENASE-RXN]]
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** 2 associated gene(s):
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*** [[CHC_T00010235001_1]]
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*** [[CHC_T00010235001]]
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** 4 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[ISOCITDEH-RXN]]
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** 1 associated gene(s):
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*** [[CHC_T00009580001_1]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[MALATE-DEH-RXN]]
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** 6 associated gene(s):
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*** [[CHC_T00009292001_1]]
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*** [[CHC_T00008733001_1]]
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*** [[CHC_T00008600001_1]]
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*** [[CHC_T00008733001]]
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*** [[CHC_T00009350001_1]]
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*** [[CHC_T00009173001_1]]
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** 4 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[RXN-14971]]
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** 6 associated gene(s):
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*** [[CHC_T00006990001_1]]
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*** [[CHC_T00008943001]]
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*** [[CHC_T00001817001_1]]
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*** [[CHC_T00008943001_1]]
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*** [[CHC_T00007584001_1]]
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*** [[CHC_T00007286001_1]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[SUCCCOASYN-RXN]]
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** 2 associated gene(s):
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*** [[CHC_T00009212001_1]]
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*** [[CHC_T00008602001_1]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=MALYL-COA-LYASE-RXN MALYL-COA-LYASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=METHYLASPARTATE-AMMONIA-LYASE-RXN METHYLASPARTATE-AMMONIA-LYASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=METHYLASPARTATE-MUTASE-RXN METHYLASPARTATE-MUTASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=METHYLMALONYL-COA-EPIM-RXN METHYLMALONYL-COA-EPIM-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=METHYLMALONYL-COA-MUT-RXN METHYLMALONYL-COA-MUT-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PROPIONYL-COA-CARBOXY-RXN PROPIONYL-COA-CARBOXY-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12168 RXN-12168]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14937 RXN-14937]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8960 RXN-8960]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8961 RXN-8961]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=methylaspartate cycle}}
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{{#set: common name=Lipoate synthase}}
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{{#set: taxonomic range=TAX-183963}}
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{{#set: ec number=EC-2.8.1.8}}
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{{#set: reaction found=9}}
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{{#set: gene associated=CHC_T00008509001|CHC_T00008509001_1}}
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{{#set: total reaction=19}}
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{{#set: in pathway=PWY-7382}}
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{{#set: completion rate=47.0}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=original_genome}}
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Latest revision as of 14:57, 9 January 2019

Pathway PWY-6728

  • common name:
    • methylaspartate cycle
  • taxonomic range:
  • Synonym(s):

Reaction(s) found

9 reactions found over 19 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PWY-6728&oldid=19616"