Difference between revisions of "ARGININE--TRNA-LIGASE-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-15688 CPD-15688] == * smiles: ** CCCCCCC=CC=CCC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-15688 CPD-15688] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGININE--TRNA-LIGASE-RXN ARGININE--TRNA-LIGASE-RXN] ==
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* smiles:
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* direction:
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** CCCCCCC=CC=CCC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=ARQUZFJQPYWSSL-NBLUIMTHSA-J
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* common name:
 
* common name:
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** 3-cis, 5-trans-dodecadienoyl-CoA
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** Arginyl-tRNA synthetase
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* molecular weight:
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* ec number:
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** 941.776   
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** [http://enzyme.expasy.org/EC/6.1.1.19 EC-6.1.1.19]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[RXN-14799]]
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** 1 [[ATP]][c] '''+''' 1 [[ARG-tRNAs]][c] '''+''' 1 [[ARG]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ARG-tRNAs]][c] '''+''' 1 [[PPI]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 ATP[c] '''+''' 1 a tRNAarg[c] '''+''' 1 L-arginine[c] '''=>''' 1 AMP[c] '''+''' 1 an L-arginyl-[tRNAarg][c] '''+''' 1 diphosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[CHC_T00010186001]]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00010186001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-original_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=90657300 90657300]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20301 20301]
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{{#set: smiles=CCCCCCC=CC=CCC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]}}
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* UNIPROT:
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{{#set: inchi key=InChIKey=ARQUZFJQPYWSSL-NBLUIMTHSA-J}}
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** [http://www.uniprot.org/uniprot/P40329 P40329]
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{{#set: common name=3-cis, 5-trans-dodecadienoyl-CoA}}
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** [http://www.uniprot.org/uniprot/P35868 P35868]
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{{#set: molecular weight=941.776    }}
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** [http://www.uniprot.org/uniprot/P43832 P43832]
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{{#set: produced by=RXN-14799}}
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** [http://www.uniprot.org/uniprot/O51540 O51540]
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** [http://www.uniprot.org/uniprot/O67068 O67068]
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** [http://www.uniprot.org/uniprot/O59147 O59147]
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** [http://www.uniprot.org/uniprot/O83803 O83803]
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** [http://www.uniprot.org/uniprot/Q9ZE81 Q9ZE81]
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** [http://www.uniprot.org/uniprot/Q9PNC0 Q9PNC0]
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** [http://www.uniprot.org/uniprot/Q9X0H8 Q9X0H8]
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** [http://www.uniprot.org/uniprot/P46906 P46906]
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** [http://www.uniprot.org/uniprot/Q57689 Q57689]
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** [http://www.uniprot.org/uniprot/O27496 O27496]
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** [http://www.uniprot.org/uniprot/Q9JTM7 Q9JTM7]
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** [http://www.uniprot.org/uniprot/Q9CE12 Q9CE12]
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** [http://www.uniprot.org/uniprot/P56128 P56128]
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** [http://www.uniprot.org/uniprot/P47618 P47618]
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** [http://www.uniprot.org/uniprot/Q9ZMB9 Q9ZMB9]
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** [http://www.uniprot.org/uniprot/Q08888 Q08888]
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** [http://www.uniprot.org/uniprot/P54136 P54136]
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** [http://www.uniprot.org/uniprot/P38714 P38714]
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** [http://www.uniprot.org/uniprot/Q05506 Q05506]
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** [http://www.uniprot.org/uniprot/P75222 P75222]
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** [http://www.uniprot.org/uniprot/P11875 P11875]
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** [http://www.uniprot.org/uniprot/O23247 O23247]
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** [http://www.uniprot.org/uniprot/O74781 O74781]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R03646 R03646]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Arginyl-tRNA synthetase}}
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{{#set: ec number=EC-6.1.1.19}}
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{{#set: gene associated=CHC_T00010186001|CHC_T00010186001_1}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 16:59, 9 January 2019

Reaction ARGININE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Arginyl-tRNA synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 a tRNAarg[c] + 1 L-arginine[c] => 1 AMP[c] + 1 an L-arginyl-[tRNAarg][c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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