Difference between revisions of "DUTP-PYROP-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10917 RXN-10917] == * direction: ** LEFT-TO-RIGHT * common name: ** aldehyde dehydrogenase, (NA...")
 
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10917 RXN-10917] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DUTP-PYROP-RXN DUTP-PYROP-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** aldehyde dehydrogenase, (NAD) activity
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.2.1.3 EC-1.2.1.3]
+
** [http://enzyme.expasy.org/EC/3.6.1.23 EC-3.6.1.23]
 +
** [http://enzyme.expasy.org/EC/3.6.1.9 EC-3.6.1.9]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-11876]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[VANILLYL_MANDELATE]][c] '''+''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[DUTP]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[DUMP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 3-methoxy-4-hydroxyphenylglycolaldehyde[c] '''+''' 1 NAD+[c] '''+''' 1 H2O[c] '''=>''' 1 vanillyl mandelate[c] '''+''' 1 NADH[c] '''+''' 2 H+[c]
+
** 1 H2O[c] '''+''' 1 dUTP[c] '''=>''' 1 H+[c] '''+''' 1 diphosphate[c] '''+''' 1 dUMP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00008341001]]
+
* Gene: [[CHC_T00009365001_1]]
−
** ORIGINAL_GENOME
+
** Source: [[orthology-galdieria.sulphuraria]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
* [[CHC_T00008341001_1]]
+
** Source: [[orthology-arabidopsis_thaliana]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
* Gene: [[CHC_T00002427001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6342]], noradrenaline and adrenaline degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6342 PWY-6342]
+
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
−
** '''4''' reactions found over '''13''' reactions in the full pathway
+
** '''12''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7206]], pyrimidine deoxyribonucleotides dephosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7206 PWY-7206]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-galdieria.sulphuraria]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-arabidopsis_thaliana]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[original_genome]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10248 10248]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q89932 Q89932]
 +
** [http://www.uniprot.org/uniprot/P33316 P33316]
 +
** [http://www.uniprot.org/uniprot/O15923 O15923]
 +
** [http://www.uniprot.org/uniprot/Q9PMK9 Q9PMK9]
 +
** [http://www.uniprot.org/uniprot/Q9Z9C2 Q9Z9C2]
 +
** [http://www.uniprot.org/uniprot/Q9JUW1 Q9JUW1]
 +
** [http://www.uniprot.org/uniprot/P43792 P43792]
 +
** [http://www.uniprot.org/uniprot/P32518 P32518]
 +
** [http://www.uniprot.org/uniprot/P68635 P68635]
 +
** [http://www.uniprot.org/uniprot/P68634 P68634]
 +
** [http://www.uniprot.org/uniprot/Q76RE7 Q76RE7]
 +
** [http://www.uniprot.org/uniprot/P03195 P03195]
 +
** [http://www.uniprot.org/uniprot/Q89662 Q89662]
 +
** [http://www.uniprot.org/uniprot/Q00030 Q00030]
 +
** [http://www.uniprot.org/uniprot/P33317 P33317]
 +
** [http://www.uniprot.org/uniprot/Q45920 Q45920]
 +
** [http://www.uniprot.org/uniprot/P43058 P43058]
 +
** [http://www.uniprot.org/uniprot/O80091 O80091]
 +
** [http://www.uniprot.org/uniprot/O36404 O36404]
 +
** [http://www.uniprot.org/uniprot/O41033 O41033]
 +
** [http://www.uniprot.org/uniprot/Q9YML1 Q9YML1]
 +
** [http://www.uniprot.org/uniprot/O39251 O39251]
 +
** [http://www.uniprot.org/uniprot/O01934 O01934]
 +
** [http://www.uniprot.org/uniprot/P10234 P10234]
 +
** [http://www.uniprot.org/uniprot/P06968 P06968]
 +
** [http://www.uniprot.org/uniprot/P09254 P09254]
 +
** [http://www.uniprot.org/uniprot/P28892 P28892]
 +
** [http://www.uniprot.org/uniprot/P28893 P28893]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04891 R04891]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02100 R02100]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=aldehyde dehydrogenase, (NAD) activity}}
+
{{#set: ec number=EC-3.6.1.23}}
−
{{#set: ec number=EC-1.2.1.3}}
+
{{#set: ec number=EC-3.6.1.9}}
−
{{#set: gene associated=CHC_T00008341001|CHC_T00008341001_1}}
+
{{#set: gene associated=CHC_T00009365001_1|CHC_T00002427001_1}}
−
{{#set: in pathway=PWY-6342}}
+
{{#set: in pathway=PWY0-166|PWY-6545|PWY-7206|PWY-7184|PWY-7187}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-galdieria.sulphuraria|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=galdieria.sulphuraria}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=original_genome}}
 

Latest revision as of 17:09, 9 January 2019

Reaction DUTP-PYROP-RXN

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 dUTP[c] => 1 H+[c] + 1 diphosphate[c] + 1 dUMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): PWY0-166
    • 12 reactions found over 17 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III: PWY-6545
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7206, pyrimidine deoxyribonucleotides dephosphorylation: PWY-7206
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I: PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II: PWY-7187
    • 4 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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