Difference between revisions of "RXN-12263"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-349 RXN1G-349] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxoacyl-(acyl-carrier-pro...")
 
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-349 RXN1G-349] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12263 RXN-12263] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** 3-oxoacyl-(acyl-carrier-protein) reductase
 
−
** 3-oxoacyl-[acyl-carrier-protein] reductase
 
−
** beta-ketoacyl reductase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100]
+
** [http://enzyme.expasy.org/EC/2.5.1.103 EC-2.5.1.103]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[3-oxo-arachidoyl-ACPs]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[R-3-hydroxyarachidoyl-ACPs]][c]
+
** 2 [[FARNESYL-PP]][c] '''=>''' 1 [[CPD-465]][c] '''+''' 1 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 NADPH[c] '''+''' 1 a 3-oxo-arachidoyl-[acp][c] '''=>''' 1 NADP+[c] '''+''' 1 a (3R)-3-hydroxyarachidoyl-[acp][c]
+
** 2 (2E,6E)-farnesyl diphosphate[c] '''=>''' 1 presqualene diphosphate[c] '''+''' 1 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00008496001]]
+
* Gene: [[CHC_T00001581001_1]]
−
** ORIGINAL_GENOME
+
** Source: [[orthology-galdieria.sulphuraria]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
* [[CHC_T00008477001]]
+
** Source: [[orthology-arabidopsis_thaliana]]
−
** ORIGINAL_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[CHC_T00008557001]]
+
−
** ORIGINAL_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[CHC_T00008517001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWYG-321]], mycolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWYG-321 PWYG-321]
+
* [[PWY-6767]], 4,4'-diapolycopenedioate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6767 PWY-6767]
−
** '''29''' reactions found over '''182''' reactions in the full pathway
+
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6105]], botryococcenes and methylated squalene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6105 PWY-6105]
 +
** '''2''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5875]], staphyloxanthin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5875 PWY-5875]
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7072]], hopanoid biosynthesis (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7072 PWY-7072]
 +
** '''1''' reactions found over '''14''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-galdieria.sulphuraria]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-arabidopsis_thaliana]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[original_genome]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00702 R00702]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/O69445 O69445]
 +
** [http://www.uniprot.org/uniprot/P36596 P36596]
 +
** [http://www.uniprot.org/uniprot/O65688 O65688]
 +
** [http://www.uniprot.org/uniprot/O23118 O23118]
 +
** [http://www.uniprot.org/uniprot/O22107 O22107]
 +
** [http://www.uniprot.org/uniprot/Q40472 Q40472]
 +
** [http://www.uniprot.org/uniprot/O22106 O22106]
 +
** [http://www.uniprot.org/uniprot/P53800 P53800]
 +
** [http://www.uniprot.org/uniprot/P53799 P53799]
 +
** [http://www.uniprot.org/uniprot/P53798 P53798]
 +
** [http://www.uniprot.org/uniprot/P29704 P29704]
 +
** [http://www.uniprot.org/uniprot/Q04903 Q04903]
 +
** [http://www.uniprot.org/uniprot/Q42761 Q42761]
 +
** [http://www.uniprot.org/uniprot/Q42760 Q42760]
 +
** [http://www.uniprot.org/uniprot/P37268 P37268]
 +
** [http://www.uniprot.org/uniprot/Q02769 Q02769]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=3-oxoacyl-(acyl-carrier-protein) reductase}}
+
{{#set: ec number=EC-2.5.1.103}}
−
{{#set: common name=3-oxoacyl-[acyl-carrier-protein] reductase}}
+
{{#set: gene associated=CHC_T00001581001_1}}
−
{{#set: common name=beta-ketoacyl reductase}}
+
{{#set: in pathway=PWY-6767|PWY-6105|PWY-5875|PWY-7072}}
−
{{#set: ec number=EC-1.1.1.100}}
+
−
{{#set: gene associated=CHC_T00008496001|CHC_T00008477001|CHC_T00008557001|CHC_T00008517001_1}}
+
−
{{#set: in pathway=PWYG-321}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-galdieria.sulphuraria|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=galdieria.sulphuraria}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=original_genome}}
 

Latest revision as of 17:09, 9 January 2019

Reaction RXN-12263

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 2 (2E,6E)-farnesyl diphosphate[c] => 1 presqualene diphosphate[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6767, 4,4'-diapolycopenedioate biosynthesis: PWY-6767
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-6105, botryococcenes and methylated squalene biosynthesis: PWY-6105
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-5875, staphyloxanthin biosynthesis: PWY-5875
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7072, hopanoid biosynthesis (bacteria): PWY-7072
    • 1 reactions found over 14 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-12263&oldid=22758"