Difference between revisions of "DETHIOBIOTIN-SYN-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-356 CPD-356] == * smiles: ** C(O)C1(OC(=O)C(O)C(O)1) * inchi key: ** InChIKey=CUOKHACJLGPRH...")
 
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-356 CPD-356] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DETHIOBIOTIN-SYN-RXN DETHIOBIOTIN-SYN-RXN] ==
−
* smiles:
+
* direction:
−
** C(O)C1(OC(=O)C(O)C(O)1)
+
** LEFT-TO-RIGHT
−
* inchi key:
+
* ec number:
−
** InChIKey=CUOKHACJLGPRHD-JJYYJPOSSA-N
+
** [http://enzyme.expasy.org/EC/6.3.3.3 EC-6.3.3.3]
−
* common name:
+
−
** D-arabinono-1,4-lactone
+
−
* molecular weight:
+
−
** 148.115   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[1.1.3.37-RXN]]
+
* With identifiers:
−
== Reaction(s) known to produce the compound ==
+
** 1 [[DIAMINONONANOATE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''=>''' 3 [[PROTON]][c] '''+''' 1 [[DETHIOBIOTIN]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c]
−
== Reaction(s) of unknown directionality ==
+
* With common name(s):
 +
** 1 7,8-diaminopelargonate[c] '''+''' 1 ATP[c] '''+''' 1 CO2[c] '''=>''' 3 H+[c] '''+''' 1 dethiobiotin[c] '''+''' 1 ADP[c] '''+''' 1 phosphate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[CHC_T00002287001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
== Pathways  ==
 +
* [[PWY0-1507]], biotin biosynthesis from 8-amino-7-oxononanoate I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1507 PWY0-1507]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7380]], biotin biosynthesis from 8-amino-7-oxononanoate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7380 PWY-7380]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* RHEA:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=17723 17723]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15805 15805]
−
* CHEMSPIDER:
+
* UNIPROT:
−
** [http://www.chemspider.com/Chemical-Structure.16751.html 16751]
+
** [http://www.uniprot.org/uniprot/Q9JV95 Q9JV95]
−
* CHEBI:
+
** [http://www.uniprot.org/uniprot/Q9PIJ1 Q9PIJ1]
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=16292 16292]
+
** [http://www.uniprot.org/uniprot/P46397 P46397]
−
* LIGAND-CPD:
+
** [http://www.uniprot.org/uniprot/P22818 P22818]
−
** [http://www.genome.jp/dbget-bin/www_bget?C00652 C00652]
+
** [http://www.uniprot.org/uniprot/P13000 P13000]
−
{{#set: smiles=C(O)C1(OC(=O)C(O)C(O)1)}}
+
* LIGAND-RXN:
−
{{#set: inchi key=InChIKey=CUOKHACJLGPRHD-JJYYJPOSSA-N}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R03182 R03182]
−
{{#set: common name=D-arabinono-1,4-lactone}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: molecular weight=148.115    }}
+
{{#set: ec number=EC-6.3.3.3}}
−
{{#set: consumed by=1.1.3.37-RXN}}
+
{{#set: gene associated=CHC_T00002287001_1}}
 +
{{#set: in pathway=PWY0-1507|PWY-7380}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-ectocarpus_siliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 18:10, 9 January 2019

Reaction DETHIOBIOTIN-SYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1507, biotin biosynthesis from 8-amino-7-oxononanoate I: PWY0-1507
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7380, biotin biosynthesis from 8-amino-7-oxononanoate II: PWY-7380
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=DETHIOBIOTIN-SYN-RXN&oldid=22767"