Difference between revisions of "GCVT-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12243 RXN-12243] == * direction: ** LEFT-TO-RIGHT * common name: ** 15-cis-phytoene desaturase...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVT-RXN GCVT-RXN] == * direction: ** REVERSIBLE * common name: ** aminomethyltransferase * ec numb...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12243 RXN-12243] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVT-RXN GCVT-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** 15-cis-phytoene desaturase
+
** aminomethyltransferase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.1.2.10 EC-2.1.2.10]
 
* Synonym(s):
 
* Synonym(s):
−
** phytoene desaturase (ambiguous)
 
−
** PDS
 
−
** plant-type phytoene desaturase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-12321]][c] '''+''' 1 [[PLASTOQUINONE]][c] '''=>''' 1 [[Plastoquinols]][c] '''+''' 1 [[CPD-13171]][c]
+
** 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[THF-GLU-N]][c] '''<=>''' 1 [[DIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[AMMONIUM]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 15-cis-phytoene[c] '''+''' 1 a plastoquinone[c] '''=>''' 1 a plastoquinol[c] '''+''' 1 15,9'-di-cis-phytofluene[c]
+
** 1 a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine[c] '''+''' 1 a tetrahydrofolate[c] '''<=>''' 1 a [glycine-cleavage complex H protein] N6-dihydrolipoyl-L-lysine[c] '''+''' 1 a 5,10-methylene-tetrahydrofolate[c] '''+''' 1 ammonium[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00009492001_1]]
+
* Gene: [[CHC_T00008727001]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00008727001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
+
* [[GLYCLEAV-PWY]], glycine cleavage: [http://metacyc.org/META/NEW-IMAGE?object=GLYCLEAV-PWY GLYCLEAV-PWY]
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-galdieria.sulphuraria]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[original_genome]]
+
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30194 30194]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16945 16945]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R09653 R09653]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04125 R04125]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* UNIPROT:
−
{{#set: common name=15-cis-phytoene desaturase}}
+
** [http://www.uniprot.org/uniprot/P25285 P25285]
−
{{#set: common name=phytoene desaturase (ambiguous)|PDS|plant-type phytoene desaturase}}
+
** [http://www.uniprot.org/uniprot/P28337 P28337]
−
{{#set: gene associated=CHC_T00009492001_1}}
+
** [http://www.uniprot.org/uniprot/P27248 P27248]
−
{{#set: in pathway=PWY-6475}}
+
** [http://www.uniprot.org/uniprot/Q9UZP8 Q9UZP8]
−
{{#set: reconstruction category=orthology}}
+
** [http://www.uniprot.org/uniprot/Q9JVP2 Q9JVP2]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/P48728 P48728]
−
{{#set: reconstruction source=galdieria.sulphuraria}}
+
** [http://www.uniprot.org/uniprot/P49364 P49364]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P49095 P49095]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P49363 P49363]
−
{{#set: reconstruction source=original_genome}}
+
** [http://www.uniprot.org/uniprot/P54260 P54260]
 +
** [http://www.uniprot.org/uniprot/P49361 P49361]
 +
** [http://www.uniprot.org/uniprot/P49362 P49362]
 +
** [http://www.uniprot.org/uniprot/O49954 O49954]
 +
** [http://www.uniprot.org/uniprot/P93256 P93256]
 +
** [http://www.uniprot.org/uniprot/O32955 O32955]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=aminomethyltransferase}}
 +
{{#set: ec number=EC-2.1.2.10}}
 +
{{#set: gene associated=CHC_T00008727001|CHC_T00008727001_1}}
 +
{{#set: in pathway=GLYCLEAV-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-original_genome|orthology-ectocarpus_siliculosus|orthology-galdieria.sulphuraria}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 17:51, 23 May 2018

Reaction GCVT-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • aminomethyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=GCVT-RXN&oldid=18298"